PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06469.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 1336aa    MW: 153576 Da    PI: 6.2576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06469.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.42.8e-2312571317259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                  dDgy WrKYG+K++ g+++pr YYrC+++    Cp++k+v+r +e+p ++ei+Ye +H++ 
  KHN06469.1 1257 DDGYIWRKYGKKQILGAKYPREYYRCAHKfvhWCPARKRVQRLDENPATIEIIYEHRHTCA 1317
                  8***************************99989*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522004.05E-328150IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101408.3E-1311125IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010419.99512147IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002554.4E-2313147IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.7E-3014175IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF009311.1E-6369554IPR002182NB-ARC
SuperFamilySSF525404.35E-8373593IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520582.55E-35681880IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.3E-29684846IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138555.6E-9714774IPR001611Leucine-rich repeat
SMARTSM003693.7738761IPR003591Leucine-rich repeat, typical subtype
SMARTSM003695.2785808IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520582.55E-359301118IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.3E-2910321061IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.805.6E-2212511317IPR003657WRKY domain
PROSITE profilePS5081119.45112511314IPR003657WRKY domain
SuperFamilySSF1182909.55E-2112541317IPR003657WRKY domain
SMARTSM007746.7E-3212561318IPR003657WRKY domain
PfamPF031066.3E-2212571316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1336 aa     Download sequence    Send to blast
MASSALTQSS SFSYDVFLSF HATDTRSNFT DFLFQALIRK GIVAFKDESR APDQAIEGSR  60
LFIVVLSKNY AFSTQCLREL SQIFHCVEFS PRRVLPIFYD VDPSDVRKQT GWYEKAFSKY  120
EERFLVNKKG METVQTWRKA LTQVANLSGW YIRNKPQYTE IEEFVQYTIS ILSSKFSTLQ  180
NKAEGTLSDK DEFSYNELSG EAEGTLSDKD EFSYNELSGL MRIRDFISLV LTYPVKLVEE  240
DILRSWISAF PEWKAQLLST GDDTVMDKPW CVLTKKALGS MKGFMPMEII SKVERGRRSI  300
FSRNDVEAIP EAILHQTVDL AVNQLIQTLF CGDYCSRYIR LLTRNLAEKR YVVDKIVAAV  360
EDKHNMFGID KDFLRALWIN ASTYETDAEF RVQEEINTMM EVDDMWPMEV DNMLGTLFIE  420
EKMGSNGQLV IVVDADSNKK LDLQKLRFPT GIVVLITTEP STQAEKDGDF RIACTMDLNI  480
WTQDHLLPWK VFCSYVGSCI SSSMVSSSMA IQKIAVEIVK ECHGHLLAIV LLSKYLMYVQ  540
DFKQWELALD KLSSLNPSYD YQDSDRIGIS RVMVNAFVNI IWEDIDDAQK LCLELSLPVH  600
NIKNGVRDDI LVSDWAKIIL GYTQELGEYR RQLQYHMKEL LDRFVLLKYE SGDVYLPIET  660
YDIIKSLHTS KPSILRHGAL GLTEPPYIGR WHSLIRIELM DNKICELPQS PDCPKLKVLL  720
LQGNVDLMDI PDSFFNHMPL LQHLDLSYTS IRDLPPSVSK LIQLQKFYLR GCDLFMELPH  780
QIGQLKNLKE LDLDGTLITH LPIEIRELIN LQILSLCFDG TSRSTIIPPG LVSNLTQLNY  840
LSINVDPEDE QWNENVISVL GEIFFGLWNL QRLSIYIPKA DLLEFIPAEK SLNFRLVVGQ  900
HMRRLISRVP PELETKFKHC DYSIKFVNGV NIPNGVKMNL GRFKALYLDR HMTIKSLSDF  960
DLRNLWGLEV CILAECNEME TIVSGSNSPD GPASLMLKFL SVFYMKNLRS VCEGSSPFFL  1020
FLKSIALHTC PMLTTIFTLD SLKKLSFLEE IIVEDCPKLT TLISHATPEQ KPVFFLPKLR  1080
IISLLYLPEL VNIFNGMHVG PFIEEMIFYY CPRLQSLSKS ELSSKSLKII KGESIWWEAL  1140
KWNEAEWGDA GRPNYFERIF SPINEEADMM NQLAALQETQ LNEYHNTTYQ GISSSKQSIA  1200
KILAPVSSVG RGSSNSEAQK RKVVAEPKIF QEVTKKGYKR REVWTAKIRV NAEGCYDDGY  1260
IWRKYGKKQI LGAKYPREYY RCAHKFVHWC PARKRVQRLD ENPATIEIIY EHRHTCAREQ  1320
NLIIKSGDEA SQSCKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A7e-3471521148TIR-NB-LRR type resistance protein RPV1
5ku7_B7e-3471521148TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232941.10.0uncharacterized protein LOC114412999 isoform X1
TrEMBLA0A445KPS00.0A0A445KPS0_GLYSO; Disease resistance protein isoform A
STRINGGLYMA05G29921.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1447945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-21WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]