PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 604aa MW: 66626.4 Da PI: 6.3163 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5e-13 | 438 | 484 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq KHN06316.1 438 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 484 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.3E-52 | 51 | 242 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.047 | 434 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.28E-15 | 437 | 488 | No hit | No description |
SuperFamily | SSF47459 | 7.85E-18 | 437 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-17 | 438 | 496 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 438 | 484 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-17 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MKIEVGLGGV WDEEEKATVM EVLGRGAFDY LVANSVSNEN LLMAFGCGEN MQNKLSDLVE 60 RPNSSNFSWN YAIFWQISQS KYGDWVLGWG DGCCREPREG EEGGGEVRRV RVVFDDDDEK 120 VQRMRKGVLQ KLHMTFGGSD EDNYAFGLDR VTDTEMFFLA SMYFSFPRGL GGPGKCFASG 180 KHLWVSDVLK SSFDYCVRSF LAKSAGIQTV VLVPTDFGVV EMGSVRMVGE SFELLQAVKS 240 VFSAQASSLL VPHMVKPIAP LDLVREKRDG SESANALLSG LAIGDKNKNI NNNSRVEGIG 300 VPKIFGQDLN CVTQFREKLA VRKMEERPRP WGGHPPNVNS IGFPNGVQGS SWGAGQVVRH 360 LGPPEMLAPR LASSGALPDV ANSAKNDFVH NNFQQQIAES EISDVEATCK EERVSVADDR 420 RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAYI 480 NELQAKLKTI ESERERFGST SMDGPELEAN ARVENHHNGT PDVDVQVAQD GVIVKVSCPI 540 DVHPVSKVIQ TFKDAEIGVV ESKVTATNVS VFHTFVVKSQ GPDQLTKDKL IALFSKESST 600 IKTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 2e-30 | 432 | 514 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 419 | 427 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06316.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528790.1 | 0.0 | transcription factor bHLH13 | ||||
Refseq | XP_028239384.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A445JSS7 | 0.0 | A0A445JSS7_GLYSO; Transcription factor bHLH13 | ||||
TrEMBL | I1KHU7 | 0.0 | I1KHU7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G06090.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 1e-139 | ABA-inducible BHLH-type transcription factor |
Publications ? help Back to Top | |||
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