PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05796.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 1532aa    MW: 175059 Da    PI: 9.2616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05796.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003714161441123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                  y+C    C++sF +k +L++H r+ +
  KHN05796.1 1416 YQCDidGCTMSFGSKQELMHHKRNiC 1441
                  99********************9877 PP
2zf-C2H212.90.0003414411463323
                  ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                  Cp   Cgk F ++ +L++H r+H
  KHN05796.1 1441 CPvkGCGKKFFSHKYLVQHRRVH 1463
                  9999*****************99 PP
3zf-C2H213.50.0002214991525123
                  EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                  y+C   dCg++F+  s++ rH r+  H
  KHN05796.1 1499 YVCAepDCGQTFRFVSDFSRHKRKtgH 1525
                  899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143535.78636339IPR004808AP endonuclease 1
TIGRFAMsTIGR006333.5E-3836321IPR004808AP endonuclease 1
SuperFamilySSF562192.49E-3936322IPR005135Endonuclease/exonuclease/phosphatase
CDDcd090871.12E-8436323No hitNo description
Gene3DG3DSA:3.60.10.103.6E-6836325IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033727.3E-2139316IPR005135Endonuclease/exonuclease/phosphatase
SMARTSM005581.2E-5180405IPR003347JmjC domain
PROSITE profilePS5118413.01191405IPR003347JmjC domain
PfamPF023733.5E-16329388IPR003347JmjC domain
SuperFamilySSF511977.96E-10334424No hitNo description
Gene3DG3DSA:3.30.160.606.0E-414081438IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.67E-514121468No hitNo description
SMARTSM003557.314161438IPR015880Zinc finger, C2H2-like
SMARTSM003550.004514391463IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.94414391468IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-614401467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014411463IPR007087Zinc finger, C2H2
SuperFamilySSF576673.79E-914551497No hitNo description
Gene3DG3DSA:3.30.160.601.2E-814681493IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74114691498IPR007087Zinc finger, C2H2
SMARTSM003550.001414691493IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014711493IPR007087Zinc finger, C2H2
SuperFamilySSF576677.82E-814871521No hitNo description
Gene3DG3DSA:3.30.160.607.2E-914941522IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.114991525IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.69714991530IPR007087Zinc finger, C2H2
PROSITE patternPS00028015011525IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032259Biological Processmethylation
GO:0090305Biological Processnucleic acid phosphodiester bond hydrolysis
GO:0009507Cellular Componentchloroplast
GO:0003676Molecular Functionnucleic acid binding
GO:0003906Molecular FunctionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1532 aa     Download sequence    Send to blast
MKRFFKVVEK DSDGSVKKPR ENDSEAEESN EKKEPLKFMT WNANSFLLRV KNNWPDFTNL  60
ITTFDPDLIA IQEVRMPAAG AKGASKIQGE IKDDTSAARE EKKILTRALS APPFGNYHVW  120
WSLADSKYAG TALLVKKCFK PKSVVFNLDK LASKHEPDGR VILVEFETLR LLNTYVPNNG  180
WKEEANSFQR RRKWDKRILE FVTQSSDKPL IWCGDLNVSH EEIDVSHPDF FSVAKLNGYI  240
PPNKEDCGQP GFTLSERKRF GTILREGKLV DAYRFLHEDK DMERGFSWSG NPVGRYRGKR  300
MRIDYFLVSE KLKERIAACE MRGHGIELEV TFATLGEKTT VMSPEVFISA GVPCCRLVQN  360
AGEFVVTFPR AYHSGFSHGF NCGEAANIAT PEWLRFAKDA AIRRASLNYP PMVSHFQLLY  420
DLALALCSSI PASISAEPRS SRLKDKKKGE GETVIKELFV QDVLQNNDLL HILGKGSDVV  480
LLPHSSVDIF VCPKLRVGFQ QSINVRNSEG MHSSKGFVSD DVVFSRSQGI KQEKSFYSVK  540
DNFTTLFERN RISSFDVNGN IRASSSNPLQ RDNDRETGQG DSLSDQRLFS CVTCGILCFS  600
CVAIVQPREP AARYLMSADC SFFNDWVVGS GVSSNKFTIA LEEATIAEPN MYTGRFYKFY  660
IQSFILWVTF ENTRTVPNST SNCSQQAHNA DRSLSNKSMV AFDNKNTSMV LQADEDSSRM  720
HVFCLEHAAE AEQQLRPIGG AHILLLCHPD YPKIEAEAKM VAEDLGIDYM WKKIAYRHAS  780
TEDEERIQSA LDNEEAIPGN GDWAVKLGIN LFYSANLSRS PLYSKQMPYN SVIYYSFGCS  840
SPASSPVEPK VYQRRVNRQK KVVAGKWCGK VWMSNQVHPL LAKRDSEDVE DEKLLLGWIL  900
PDEKFERSEI TLKSETTSRK SGKKRKMTAE NGRPKKGSYA KKNVVADNST EGKHNSQPRR  960
ILRNKKARCV ERDHAALKGD YCPPYHRKSI SKQANCSESD AVSDDSLDDD DHMHHRRNAI  1020
VEKDKFIDND VSNDTVDCDS DWQQREELSS KKVEDTERVA ISEDSLDVGS LQLLRKNSRA  1080
KHAKNISQED IISDDQMESP LQKRQRRIPK SRQGKYLTGK DIISDDQLEH KKKKQQRKNP  1140
KSRQAKYLNE EDIASDDQLE GHYRRYQRKN SRGRHAKCVA GEDGMPDDQL EDRCQKQQTS  1200
FSRKRQNKGI DREVKNEISD DHLEDHFLKQ HRRFPKSRQN KHTDKEVMDD LAENNSHLLH  1260
RTPKRKQAKC MEEDDMNSDD EMEDNQPLRR TLRSKQAKPK TLQQMKQANS FQAKKQASRP  1320
IKQGSRMLVK SKAPQQIKQP SHLRNKQSNN TQEFSLDMEE EEEGGPSTRL RKRATKAQES  1380
EGKLKDKQTK RMKVKNAAAA KVSVGDARMQ DGEAEYQCDI DGCTMSFGSK QELMHHKRNI  1440
CPVKGCGKKF FSHKYLVQHR RVHEDERPLK CPWKGCKMTF KWAWARTEHI RVHTGARPYV  1500
CAEPDCGQTF RFVSDFSRHK RKTGHSAKKN CQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-691414153021137Lysine-specific demethylase REF6
6a58_A2e-691414153021137Lysine-specific demethylase REF6
6a59_A2e-691414153021137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113701392RKRATKAQESEGKLKDKQTKRMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05796.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353400.0AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229373.10.0lysine-specific demethylase REF6-like
TrEMBLA0A0B2P9C90.0A0A0B2P9C9_GLYSO; Lysine-specific demethylase REF6
STRINGGLYMA04G36620.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-111relative of early flowering 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]