PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN05778.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 594aa    MW: 64787.9 Da    PI: 7.1216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN05778.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09394441455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KHN05778.1 394 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 441
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17388459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-10388445No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16390458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663390440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6394441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10396446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MENQFFLNSG VSQTQHHHPL HLESSPPSNP SSVPSWQSLS PPNMGIQPTV MNCASEQTQQ  60
DCFYNSNWDK STTTDQGLHH FDSSALSSMV SSPAASSNPN NNMSNENFII RELMGKLGAI  120
GNSDEIPQHS PHPLVVASSY MNTKGNNSTN TSCYSTPLSS PPKVNIVNSL VNLRLANLGG  180
GKSTTTVLNS SVAEFSADPG FAERAAKFSC FGSRSFNDRS VQLRVNNAEL AQRSAPAMEH  240
GGKLPRVSSS PLLKTLGSQM GAQENKNSAI HQEQEKMEGA NSQEESTISE QTPNGEIGVK  300
TSQDIMNSRK RKASSKGKAK ETSNTTNPTK GVEGSEYSNS KRSKPNEGNE NGQVKVEEES  360
KAEEEKQSKS NSKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC  420
NKVTGKALML DEIINYVQSL QRQVEFLSMK LASVNTRMDL SIESLVTKDV FQSNNSLATH  480
PNAIIFPLGS SAQAFYGHQP QQNNPVFHNN IPNRTATHCS VDPLDTSLCQ NLAMQLSPLD  540
VFNEGGSQFP LAFLEDDLHT IVQMGFGQAA NRKTPIQSSS FNGSNNVPQM KVEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN05778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028224839.10.0transcription factor bHLH62-like
TrEMBLA0A0B2PDT20.0A0A0B2PDT2_GLYSO; Transcription factor bHLH62
STRINGGLYMA03G21770.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-96bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]