PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04981.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 428aa    MW: 46900.8 Da    PI: 7.8894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04981.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-113864127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C+++ rtG C++G++C+F+H+p
  KHN04981.1 38 PGEPDCSYYIRTGLCRFGATCRFNHPP 64
                5789*********************97 PP
2zf-CCCH24.64.5e-0886107427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C+  art tCk+G++CkF+H++
  KHN04981.1  86 PECQ--ARTRTCKFGATCKFHHPK 107
                 5666..9***************96 PP
3zf-CCCH38.61.8e-12129153327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +++rtG+Ck+G++CkF+H++
  KHN04981.1 129 EPECTYYLRTGQCKFGNTCKFHHPQ 153
                 799********************97 PP
4zf-CCCH345e-11288314127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+ +tG Ck+G+ C+F+H++
  KHN04981.1 288 PGQPECQFYVKTGDCKFGAVCQFHHPR 314
                 5789*********************96 PP
5zf-CCCH37.73.4e-12335360227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++lC f++r+G+Ck+G++CkF H++
  KHN04981.1 335 GEPLCVFYSRYGICKFGPSCKFDHPM 360
                 579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-53764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5873765IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-83964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-54265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-44363IPR000571Zinc finger, CCCH-type
SMARTSM003560.7782107IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.25482108IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-587107IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939126154IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10129153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4132152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986287315IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5287314IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7289314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5291317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5293315IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802333361IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5336361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4338359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
METNNNLNLI VPNPQDSLWM MNLRTGETVD SGSYPERPGE PDCSYYIRTG LCRFGATCRF  60
NHPPNRRLAI ATARMIGEFP ERIGQPECQA RTRTCKFGAT CKFHHPKDQA GIAGRVALNI  120
LGYPLRPNEP ECTYYLRTGQ CKFGNTCKFH HPQPSNMMLS LRGSPVYPTV HSPTTPGQES  180
YAGGITNWSR GSYIPSPRWQ GPSSYGPLIL PQGVVSVPGW SAYSGQMGSI STSDSPQQAM  240
RNGQTYETSH QGELANAGSQ GAYSQFRSGT VPVGFYTLQR ENIFPERPGQ PECQFYVKTG  300
DCKFGAVCQF HHPRERLIPA PDCVLSPIGL PLRLGEPLCV FYSRYGICKF GPSCKFDHPM  360
EIFSYNITAS PSADAPSRHL LGSSSGTAAL NLSSEGLVES SSAKPRPLSL SEIRQIPSGD  420
DNIDDDVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221924.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A445F8L40.0A0A445F8L4_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform A
STRINGGLYMA20G36140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-169zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]