PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03109.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 549aa    MW: 62029.3 Da    PI: 4.6161
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03109.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.29.6e-1091765451374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.....sseelaalklfsevsPilk 92 
                 lv+ Ll+cAeav  +d+++a+ lL+r+  las +gd++qR+  +f+++L+ rl+    + +++a  ++      +      +++l a++l+++++P++ 
  KHN03109.1 176 LVHMLLACAEAVGCRDNQQAELLLSRIWALASTSGDSLQRVSYCFAKGLKCRLSLlPHNVIANATlSSM-----DgpfitRENKLEAFQLLYQTTPYIA 269
                 689**************************************************9933333333321333.....2234559999*************** PP

        GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledle 190
                 f++++aN+aI +a +g++ +Hi+D+++++ lQW +L++aL+sRpegpp+lRiTg+  +e  ++ +l++  + L + A++lg+++ef+++ ++ +   l+
  KHN03109.1 270 FGFMAANEAICQASQGKSSIHIVDLGMEHTLQWSSLIRALSSRPEGPPTLRITGLTGNE--ENSKLQASMNVLVEEASSLGMHLEFHIISEHlTPCLLT 366
                 *********************************************************55..99*************************7444466788* PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 +e+L+++++Eal Vn++lqlh+ ++es    +   e+L  +k+l P+ ++vveq+++hn++ Fl rfle+l+yysa+fdslea++ r+s++r+k+Er  
  KHN03109.1 367 MEKLNLRKEEALCVNSILQLHKYVKESRGYLK---EILLSIKKLGPTALTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMTRNSQHRMKIERLH 462
                 ************************88877777...9*************************************************************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++ei+nvva eg +r+erhe++ +Wr++l++aGF+ +pl+   ++q++++l+ ++ dgy++  e+g l+lgWk+rp++++SaW+
  KHN03109.1 463 FAEEIQNVVAYEGPDRIERHERVDQWRRQLGRAGFQVMPLK--CTSQVRMMLSVYDCDGYTLSYEKGNLLLGWKGRPVMMASAWQ 545
                 ****************************************7..679**************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.311150527IPR005202Transcription factor GRAS
PfamPF035143.3E-106176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKGINRWLSF YMDESVNHDF AIRRYCPARM EQEQGGDKCQ DQEALVFYDT ELCSSDATSS  60
TPCLASSEVD DFVDSFINMD QYEYVNEDQG FQEKHRSFDH FVVNDEDEAD AYSIVNGVFE  120
YVPTTLEDSE LEIYEDVTTA MLEEEVAMNG SFCAIPEFVV PCTQEANLGV DQGLDLVHML  180
LACAEAVGCR DNQQAELLLS RIWALASTSG DSLQRVSYCF AKGLKCRLSL LPHNVIANAT  240
LSSMDGPFIT RENKLEAFQL LYQTTPYIAF GFMAANEAIC QASQGKSSIH IVDLGMEHTL  300
QWSSLIRALS SRPEGPPTLR ITGLTGNEEN SKLQASMNVL VEEASSLGMH LEFHIISEHL  360
TPCLLTMEKL NLRKEEALCV NSILQLHKYV KESRGYLKEI LLSIKKLGPT ALTVVEQDTN  420
HNGPFFLGRF LESLHYYSAI FDSLEASMTR NSQHRMKIER LHFAEEIQNV VAYEGPDRIE  480
RHERVDQWRR QLGRAGFQVM PLKCTSQVRM MLSVYDCDGY TLSYEKGNLL LGWKGRPVMM  540
ASAWQVASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-6418354425377Protein SCARECROW
5b3h_D4e-6418354425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN03109.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202548.10.0DELLA protein RGL1-like
TrEMBLA0A0B2P6860.0A0A0B2P686_GLYSO; DELLA protein GAI1
STRINGGLYMA15G28410.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-76RGA-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]