PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02803.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 415aa    MW: 45910.4 Da    PI: 6.1923
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02803.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.71.3e-2576162188
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                 +fYn+YA+ +GF+vrk+  ++sk +g++++r+f+Cskeg+r+++k++  + +++r+etr gC a++ v+++ dgk++vt++e +HnH+
  KHN02803.1  76 QFYNKYARLLGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRD-ANVKKHRKETRSGCLAHMIVTRQPDGKYQVTHFEAQHNHD 162
                 6*******************************************999.99999**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2376162IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDGDQNELGT VGEGNVDIGP QTLNNLDLNV EQNCCSSNVA HASDTQSCHP SSANVLSGDT  60
VLGIGTEFES DDHAYQFYNK YARLLGFNVR KDWINRSKVH GQVVSRKFTC SKEGYRRKDK  120
RDANVKKHRK ETRSGCLAHM IVTRQPDGKY QVTHFEAQHN HDNINSNSNS ANMLNLQNEF  180
SVAQAVEADS NNSLGPKSKL LKLSARASES MEAYQFAARQ LDEVMIGVEK ILTLKVEQRQ  240
VITSSNIDAN ASENEPAEIF LNGHAIEDQD ESNRANGGKD RRATSDRGYL TTMTCNGADS  300
DRILNVEVSP PNTVVCISSP SSAYVSSHSA TPNPILQGLY GFEANQVVHC MYEQTNHVLD  360
HQSNSNTLQP PNIFSNQQDS PGQSQLLQGM DLDIRNPHSS SFLLYDHRYR SSKSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618844.11e-124protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A445F5M01e-127A0A445F5M0_GLYSO; Uncharacterized protein
STRINGGLYMA20G29541.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-19FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]