PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02495.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 59aa    MW: 6833.98 Da    PI: 4.939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02495.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.3e-161057149
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                lppGfrF P+deelv++yL kk++++++    ++ e+d++ +ePw+Lpk
  KHN02495.1 10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLVEIDLHICEPWQLPK 57
                79*************************655.78**************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-17858IPR003441NAC domain
PROSITE profilePS5100519.3621059IPR003441NAC domain
PfamPF023651.1E-81153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLVEIDLHIC EPWQLPKLF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362243e-88AC236224.2 Glycine max clone GM_WBc0124O13, complete sequence.
GenBankBT0893653e-88BT089365.1 Soybean clone JCVI-FLGm-1D22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604496.13e-37protein CUP-SHAPED COTYLEDON 3
RefseqXP_014495173.12e-37protein CUP-SHAPED COTYLEDON 3
RefseqXP_017411133.12e-37PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_028217415.12e-37protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FFI51e-14NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0S3RY784e-36A0A0S3RY78_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TN374e-36A0A1S3TN37_VIGRR; protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A445FHG85e-36A0A445FHG8_GLYSO; NAC domain-containing protein 21/22
TrEMBLK7MYQ16e-36K7MYQ1_SOYBN; Uncharacterized protein
STRINGGLYMA19G34881.11e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1720277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.23e-25NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]