PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02122.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 542aa    MW: 59995.6 Da    PI: 7.3628
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02122.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33218275260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  KHN02122.1 218 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 275
                 8****************************************.***************85 PP
2WRKY107.56.5e-34377435159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  KHN02122.1 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASQDLRAVITTYEGKHNHD 435
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-28212276IPR003657WRKY domain
SuperFamilySSF1182901.06E-25216276IPR003657WRKY domain
SMARTSM007741.4E-36217275IPR003657WRKY domain
PROSITE profilePS5081123.778218276IPR003657WRKY domain
PfamPF031068.2E-26218274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37362437IPR003657WRKY domain
SuperFamilySSF1182902.48E-29369437IPR003657WRKY domain
PROSITE profilePS5081137.792372437IPR003657WRKY domain
SMARTSM007741.6E-39377436IPR003657WRKY domain
PfamPF031065.1E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MTTSFSDLLS SPTTDHNLGV SERPHLKSSS SDQAGSSGGV PKFKSTPPPS LPLSHHLPPI  60
FSPSSYFNFN IPHGLSLAEL LDSPVLLNSS NVLPSPTTGS FAGQGFNWKS SYGESQQHVK  120
EEDKSFSSFS FQTQTHPPLP SSNGFQSSTG VVQTGWSFPE IAKQDGFASR MSMSMVKTET  180
TSAMQSFNSE NNNHRNGFQS DHKNYQPPQV QTLSRRSDDG YNWRKYGQKQ VKGSENPRSY  240
YKCTYPNCPT KKKVERSLDG QITEIVYKGT HNHPKPQAAK RNSLSASSLA IPHSNHGSNE  300
LQHHQMDSVA TPENSSISMD DDDFDHTKSG GDEFDNDEPD AKRWRIEGEN EGMPAIESRT  360
VREPRVVFQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTFPGCPV RKHVERASQD  420
LRAVITTYEG KHNHDVPAAR GSGNNSMNRS LPITNTTNNT SAATSLYTNN NYLQSLRPPA  480
APERTSSHFN PNMQQSSSGS FGFSGFGNPL MGSYTNQQSD NVFITRAKEE PGDDSFLDSF  540
LC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37210438878Probable WRKY transcription factor 4
2lex_A5e-37210438878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02122.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195910.0EU019591.1 Glycine max WRKY62 (WRKY62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212129.10.0probable WRKY transcription factor 26
SwissprotQ6IEQ71e-133WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0B2P3720.0A0A0B2P372_GLYSO; Putative WRKY transcription factor 33
STRINGGLYMA18G06360.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-104WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  5. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]