PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27506.3 Da PI: 8.1235 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 1.9e-12 | 64 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ + ++++lG+g+W+ I+r + Rt+ q+ s+ qky KHN01927.1 64 PWTEEEHRTFPVGFEKLGKGDWRGISRNYVTSRTPTQVASHAQKY 108 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.484 | 57 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-8 | 61 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-15 | 62 | 113 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-15 | 63 | 111 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.7E-9 | 63 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-7 | 64 | 109 | No hit | No description |
Pfam | PF00249 | 6.6E-10 | 64 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MIRMEDSEGS GLCCWNGVFR FWYSFFSLCV FIELFKHANN GVFRSIQYIP KNSKWLQENL 60 TGVPWTEEEH RTFPVGFEKL GKGDWRGISR NYVTSRTPTQ VASHAQKYFI RLATMNKKKR 120 RSSLFDMVGN GITNPISSSN CKSSKCEIED DVTLSLVQLQ DTKLDEQKDS DKYCEAGPAG 180 AEHEAVPLWL HPQMKSSNNN VAAVVPDLEL TLAVSKGKAK TLLGLEQTQT KSSPDSFLLG 240 PISVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 120 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097705 | 3e-95 | BT097705.1 Soybean clone JCVI-FLGm-16G4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235955.2 | 1e-130 | MYB transcription factor MYB128 | ||||
TrEMBL | A0A0B2P2L8 | 0.0 | A0A0B2P2L8_GLYSO; Transcription factor MYB1R1 | ||||
STRING | GLYMA01G00600.1 | 1e-130 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 4e-34 | MYB_related family protein |
Publications ? help Back to Top | |||
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