PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN01835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20304.7 Da PI: 7.0869 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 22 | 112 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ff ++++++ l+ + l+lp kf++++g+ s + l+ ++g +W+v+l +k++g++++++GWk+F++ L g + F++dg+s f +v +++ KHN01835.1 22 FFRIMLHENLLQGN-LRLPEKFVRKYGNH--LSNSMLLKLPNGVEWKVNL--EKRDGSVWFQEGWKDFAEYYSLANGHLLGFRYDGTSHF--HVFICD 112 66677666666665.***********966..7889999************..**********************************9999..888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-24 | 17 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-25 | 17 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.58E-20 | 21 | 112 | No hit | No description |
PROSITE profile | PS50863 | 12.915 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-14 | 22 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-16 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MTSQLDDGDG SYGYSATKPI HFFRIMLHEN LLQGNLRLPE KFVRKYGNHL SNSMLLKLPN 60 GVEWKVNLEK RDGSVWFQEG WKDFAEYYSL ANGHLLGFRY DGTSHFHVFI CDMSTMEIEY 120 PVNKANHKRP SINSEESQPH KTQKTDENMN KSNSNLQDTD IHKEARDHKG KILDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN01835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246886.1 | 1e-126 | B3 domain-containing protein At4g01580-like | ||||
TrEMBL | A0A0B2NXS0 | 1e-129 | A0A0B2NXS0_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
STRING | GLYMA08G44655.1 | 1e-126 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 3e-26 | B3 family protein |
Publications ? help Back to Top | |||
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