PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN01697.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 282aa    MW: 31331.3 Da    PI: 7.8554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN01697.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003989111123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ C + F++   L  H+++H
  KHN01697.1  89 YYCSFCRREFRSAQALGGHMNVH 111
                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-686116No hitNo description
PROSITE profilePS5015711.01189116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
FQYHGCRDWP CLGDPDSKFV KIPAPSKSKP TTTTKNPNST SHLPTPSSST TCWMWNPRDH  60
EDQDESWEVR AFAEDTSNMM GTTWPPRFYY CSFCRREFRS AQALGGHMNV HRRDRARLHQ  120
ASVVPHNNNN SNNSNINPIS SFSNTPSFLN ISHHHQDPFV ANGGLCRLYP FPSPNNNNND  180
PFSSLAHNNN ACGDLPSTVF SVSSSHSQYS SLQYPPMRVP SCSATSFDFS VAQPAAASGR  240
NNVFSSSYSG KVEQEPIISS STHHGLHHAE LELRLGNKST ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-1184111229superman protein
2l1o_A5e-1184111229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN01697.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028210172.11e-168zinc finger protein 10-like
TrEMBLA0A445G7A51e-167A0A445G7A5_GLYSO; Zinc finger protein 10
STRINGGLYMA17G16690.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-33C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]