PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00994.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 386aa    MW: 42025.1 Da    PI: 9.6464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00994.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-19221270356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +kGVr+++ +g+WvAeIr p++   r+r++lg+f++ae+Aa a++ a+  l+ge
  KHN00994.1 221 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDSAEDAAIAYDTAAYILRGE 270
                 8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.26E-30219279No hitNo description
Gene3DG3DSA:3.30.730.103.3E-30220278IPR001471AP2/ERF domain
PROSITE profilePS5103221.838220277IPR001471AP2/ERF domain
SMARTSM003807.0E-33220283IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22220278IPR016177DNA-binding domain
PRINTSPR003672.1E-9221232IPR001471AP2/ERF domain
PfamPF008472.7E-11221270IPR001471AP2/ERF domain
PRINTSPR003672.1E-9243259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MATGSKFLDN AIIRGSHSLT ASNHVPVLRG GVNSSIASPH EKLLLCSNSV SMKEEAPLAT  60
WISHIPAKFN GHEDIKNGKE KNQSNSIFPV SDIKNSSIPL NLLETLPPLT IAPCFDDPVA  120
SLASSSARPK FPNLTLFLPE PSMVYSSISS SNIKGGEVMS ATSDPSYHVS QFGQNQHQAG  180
SGDAHKMNNN LTNSRSKSFN ENWLSATRTQ PLKYGGRGKL FKGVRQRHWG KWVAEIRLPR  240
NRTRVWLGTF DSAEDAAIAY DTAAYILRGE YAQLNFPDLK HVIQANSLNG TTAALVEAKL  300
QAISQGGSSH RKPTNSPPGS SNKHNDENGK LKSISGKDSS IRVGAEVTER SKSKHHETSD  360
VEGVQLSRMP SLDMDIIWDE LFISNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20216277163ATERF1
3gcc_A6e-20216277163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310950.0KT031095.1 Glycine max clone HN_CCL_19 AP2-EREBP transcription factor (Glyma20g33890.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606324.10.0ethylene-responsive transcription factor ERF062
RefseqXP_028220061.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLA0A0K2CT310.0A0A0K2CT31_SOYBN; AP2-EREBP transcription factor
TrEMBLI1NHW30.0I1NHW3_SOYBN; Uncharacterized protein
STRINGGLYMA20G33890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-54ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]