PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00670.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 280aa    MW: 31338.2 Da    PI: 8.1122
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00670.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17205239135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  KHN00670.1 205 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 239
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-15199253IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15201263No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13203237IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.108203235IPR000679Zinc finger, GATA-type
CDDcd002023.21E-11204251No hitNo description
PROSITE patternPS003440205230IPR000679Zinc finger, GATA-type
PfamPF003205.4E-15205239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDVCRNVSVS SSECQQELPT LDDLFSHQNT EVDFGLEWLS VFVEDCFSSR PSCLLAPGGV  60
QTTSTSTSTK PSSGTILQRP QQLSHHCPLQ NFAVPGKARS KRKRKRLSAP RTTKHTLSTW  120
SQHFSTQNDG VSSDPPLLKQ AYWLADSELI VPKKKDVEQE EEEGVVVVVK KEKLGDYCDH  180
DEGDEINNNN SNNDDNVQHP IPRRCTHCLA QRTPQWRAGP LGPKTLCNAC GVRYKSGRLL  240
PEYRPAKSPT FVSYLHSNSH KKVMEMRMGV VGVFSTDNNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0892500.0BT089250.1 Soybean clone JCVI-FLGm-1B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518214.10.0GATA transcription factor 2 isoform X2
RefseqXP_028198986.10.0GATA transcription factor 2-like isoform X2
TrEMBLA0A0R0L3S50.0A0A0R0L3S5_SOYBN; Uncharacterized protein
TrEMBLA0A445LKK20.0A0A445LKK2_GLYSO; GATA transcription factor 9
TrEMBLI1JD480.0I1JD48_SOYBN; Uncharacterized protein
STRINGGLYMA02G07850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-34GATA transcription factor 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]