PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN00559.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 399aa MW: 40541 Da PI: 6.1561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN00559.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H KHN00559.1 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.21E-5	58	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	60	82	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.1E-5	60	82	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MTVDLDNAST ASGEAASVSS SGNQTKPAAP KKKRNLPGMP DPEAEVIALS PKTLLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEKARRE EVETATTTTT TTITSTTQAN 120 SVMSSCLQTH NLDLPENNPP QVIEEPQAAT ATAISGSCGS SSSCSTSNGG ATCNSNSSSS 180 VFASLFASST ASVTLQSQTP AFSDLIRAMG PPEHPADQIS GPSSEAISLC LSTTSASPIF 240 ATGGRQYASS SPHPAMSATA LLQKAAQMGA AATNASLLRG LGIVSSSPLD STSSGQQNVL 300 QWGHQQQLEP ESGSVAAAGL GLGLPCEDGG SGLKELMMGT SSMFGPKHTT LDFLGLGMAA 360 GGTAGGGLSA LITSIGGGLD VTAAFGNGDF SGKDIGSSS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MTVDLDNAST ASGEAASVSS SGNQTKPAAP KKKRNLPGMP DPEAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEKARRE EVETATTTTT TTITSTTQAN  120
SVMSSCLQTH NLDLPENNPP QVIEEPQAAT ATAISGSCGS SSSCSTSNGG ATCNSNSSSS  180
VFASLFASST ASVTLQSQTP AFSDLIRAMG PPEHPADQIS GPSSEAISLC LSTTSASPIF  240
ATGGRQYASS SPHPAMSATA LLQKAAQMGA AATNASLLRG LGIVSSSPLD STSSGQQNVL  300
QWGHQQQLEP ESGSVAAAGL GLGLPCEDGG SGLKELMMGT SSMFGPKHTT LDFLGLGMAA  360
GGTAGGGLSA LITSIGGGLD VTAAFGNGDF SGKDIGSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN00559.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148484	5e-39	AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518037.1	1e-154	protein indeterminate-domain 2
Refseq	XP_003518040.1	1e-154	protein indeterminate-domain 2
Refseq	XP_028197465.1	1e-154	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Refseq	XP_028197478.1	1e-154	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	2e-47	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A445LK43	1e-153	A0A445LK43_GLYSO; Protein indeterminate-domain 1
TrEMBL	K7K6N3	1e-153	K7K6N3_SOYBN; Uncharacterized protein
STRING	GLYMA02G06500.2	1e-153	(Glycine max)
STRING	GLYMA02G06510.1	1e-153	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	2e-41	C2H2-like zinc finger protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]