PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00492.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 362aa    MW: 41981.3 Da    PI: 6.5875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00492.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.3e-5561351129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeelv +yL+kkv+++k++l +vike+d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ +
  KHN00492.1   6 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKEIDLYRIEPWDLQEicrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYE-S 102
                 69****************************.9***************954532334667**************************************.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +l+g++ktLvfykgrap+g+ktdW+mheyrle
  KHN00492.1 103 IKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 135
                 99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-583155IPR003441NAC domain
PROSITE profilePS5100558.7926155IPR003441NAC domain
PfamPF023651.1E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMESCVPPGF RFHPTDEELV GYYLRKKVAS QKIDLDVIKE IDLYRIEPWD LQEICRIGYE  60
EQNEWYFFSH KDKKYPTGTR TNRATMAGFW KATGRDKSVY ESIKLIGMRK TLVFYKGRAP  120
NGQKTDWIMH EYRLETVENG PPQEEGWVVC RAFKKRTTNG QTKTIERWDR NYLYDEQACG  180
SVSSTVVDHN IDLMVRQQQP QRFSAAQNFL YKQEEIIEEG NNNLSFMHAE QHLVQLPQLE  240
SPSLPLAKKQ SSVMSLIAEN IINNEDIDNI SQKGLSHNTA KKVTTDWRAL DKFVASQLSH  300
EERHELIGVS SFATHHTTTS SDMALLLLQN NSRENERNYK FNPFLNTSST SDCDIGICVF  360
EK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-50315612169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00492.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941621e-156BT094162.1 Soybean clone JCVI-FLGm-18C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196710.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-141NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A445LJN50.0A0A445LJN5_GLYSO; NAC domain-containing protein 37
STRINGGLYMA02G05620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-125vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  4. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]