PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99856.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 973aa    MW: 106784 Da    PI: 6.5086
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99856.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.41e-2175176199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++         +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ F   ++L +gD+v+F   ++++++l
  KHM99856.1  75 FCKQLTASDTSTHGGFSVPRRAAEKIfppldysV-QPP-AQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFIGGKRLLAGDSVLFV--RDEKQQL 169
                 99*****************************843.333.359************************************************..5688889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  KHM99856.1 170 LLGIRRA 176
                 ****997 PP
2Auxin_resp117.31.3e-38201284183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+a++++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++gvsdld+vrW+nS Wr+L+
  KHM99856.1 201 AAQAVANNSPFTVFYNPRASPSEFVIPLAKYSKAVYsHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQ 284
                 789********************************9899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-4264203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-3966190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-1774166No hitNo description
PfamPF023622.3E-1975176IPR003340B3 DNA binding domain
SMARTSM010197.0E-2175177IPR003340B3 DNA binding domain
PROSITE profilePS5086311.53375177IPR003340B3 DNA binding domain
PfamPF065074.8E-34201284IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
INAELWQACA GPLLNLPSPG THVVYFPQGH SEQADPDTDE VYAQMTLQPV PSFDTDALLR  60
SDIFLRSSKP QPEFFCKQLT ASDTSTHGGF SVPRRAAEKI FPPLDYSVQP PAQELVARDL  120
HDNVWRFRHI YRGQPKRHLL TTGWSLFIGG KRLLAGDSVL FVRDEKQQLL LGIRRANRQP  180
SNLSSSVLSS DSMHIGVLAA AAQAVANNSP FTVFYNPRAS PSEFVIPLAK YSKAVYSHHI  240
SPGMRFRMMF ETEDSGTRRY MGTIIGVSDL DSVRWKNSLW RNLQVGWDES TAEERQSRVS  300
VWEIEPVTTP YFICPPPFFR SKIPRLLGMP DDEPDFNNLF KSTVPWLGDD MCVKGPQALP  360
GLSLVQWMNI QQNPALASSL QPNCGPSMSG LVLQNLPGAD IANPLGFSTS QISQSNNVSV  420
DAQNILQTSQ QLDHIQKPPC PSSALGAVTQ PLQQLGDITQ QPRNLTNQTL PHDQAHTQLL  480
NPQRVVQTNN IHQQQQSSIQ KQQLLRSLSQ NRAQKHQQTT LGLNERQIVF QSPMPDHFNQ  540
QLQMSDNQVR FQLLQKLQQQ QQTLLAQQSA LQQPALIQIQ DQQRQLLDVA NNSSSPIPGQ  600
VLENLPTLQN SLPEANSITH QITMPSSQKN FHYSHLSQQP ALLSEMSGHV GLPPTVTTNP  660
LSASGGSILT GVGQSVITDD VPSCSTSPST NNRASVLPPV VSSQIHRSTT IGDDMAQSAV  720
TISGASTLET MSSNANIVQP KYEVKASLNI SKNQNQGNVA PQTYLNGVVQ TDYLDSSSST  780
TSLYHFRSDT HMHQNTNPFS YNPQLVYCRD NSQNVEVQAD ARNNVLIGNN VNGQMGMPSN  840
LDSLLTKGTV GLGKELSNKF ASGGLLRDLE NNKGVPPEIS SSMVSQTFEV PDMSFNSIDS  900
TIDGSSFLNR GPWDLPPPPP PPPPPHTPRE FVNCVRCIKI LSPQEVQQMS LDGDFGNGGL  960
PYPAGSSSDG GNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-143130551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99856.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353420.0AC235342.1 Glycine max strain Williams 82 clone GM_WBb0088H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524425.10.0auxin response factor 19-like isoform X1
RefseqXP_028233750.10.0auxin response factor 19-like isoform X1
RefseqXP_028233751.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A445KSM70.0A0A445KSM7_GLYSO; Auxin response factor
TrEMBLI1K6510.0I1K651_SOYBN; Auxin response factor
STRINGGLYMA05G36430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]