PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99705.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 224aa    MW: 24801.9 Da    PI: 6.7907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99705.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-054163123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C k F++   L  H+++H
  KHM99705.1 41 YSCTFCRKEFRSAQALGGHMNVH 63
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-63868No hitNo description
Gene3DG3DSA:3.30.160.602.1E-43966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3444168IPR007087Zinc finger, C2H2
SMARTSM003550.00614163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MWNPRDQYHH QDQDQDESWE VRAFAEDTSN IMGTTWPPRS YSCTFCRKEF RSAQALGGHM  60
NVHRRDRARL HQASVPHNNP SFSPTPSFLN ISHQEPFVAN GGLCLLYPFP SPNNNAPFSS  120
LGHNNNACGD SPSTAFSVSS SHSLQYPPMR VPSCSASTSF DFSVAQPAPP AVGRNNNGFS  180
SSYSGKVEQE PPTNDSSTHH GHGRHHHDEE LDLELRLGNK STST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-123663229superman protein
2l1o_A5e-123663229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357451e-84AC235745.1 Glycine max strain Williams 82 clone GM_WBb0152I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631095.11e-166zinc finger protein 10
RefseqXP_028232252.11e-166zinc finger protein 10-like
TrEMBLA0A445KM431e-166A0A445KM43_GLYSO; Zinc finger protein 10
STRINGGLYMA05G23620.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]