PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 35438.4 Da PI: 8.608 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162 | 2.3e-50 | 19 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPtdeelv +yL++kv++k+l++ e ik+vdiyk++PwdLpk + +ekewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk++++ +e KHM99647.1 19 LPGFRFHPTDEELVGFYLQRKVDKKPLKI-ELIKQVDIYKYDPWDLPKVNSFGEKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVkePHE 116 69***************************.89***************66566999*************************************9744556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+ktdW+mhe+rl KHM99647.1 117 CIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146 6***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-55 | 14 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.337 | 18 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-25 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNAKVHSSDD TKKDEEVVLP GFRFHPTDEE LVGFYLQRKV DKKPLKIELI KQVDIYKYDP 60 WDLPKVNSFG EKEWYFFCIR GRKYRNSVRP NRVTRSGFWK ATGIDKSIYC VKEPHECIGL 120 KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KSNPNDLQEA EVWTLCRIFK RIPSFKKYTP 180 NLKDSTPVTK PNPVNSNTST LNSDNCEPYL ICRDPMVMQQ IERKPVIGQV DEKKHMFLGQ 240 FGPLPHHLQA PSTTPYPNFW DQNNVEDYTF ANENWDDLRS VVQFAIDPST VFDCTGTYIP 300 PYFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 20 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 20 | 177 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 20 | 177 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 20 | 177 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99647.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093838 | 0.0 | BT093838.1 Soybean clone JCVI-FLGm-14E12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247000.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-88 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A445JMH9 | 0.0 | A0A445JMH9_GLYSO; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | GLYMA08G41995.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 9e-91 | NAC domain containing protein 42 |