PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99555.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 389aa    MW: 42888.3 Da    PI: 7.9715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99555.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-0842702048
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48
                     Ggg+W+++ r  g++R++k+c++rw ++l
       KHM99555.1 42 GGGNWNAVQRNTGLNRCGKSCRLRWANHL 70
                     7789*********************9986 PP
2Myb_DNA-binding51.32.7e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++l+vd+++q+G++ W++ a+ ++ gRt +++k++w++
       KHM99555.1  76 KGAFSPEEEKLIVDLHAQFGNK-WARMAALLP-GRTNNEIKNYWNT 119
                      799*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071724372IPR001005SANT/Myb domain
PfamPF002498.7E-64270IPR001005SANT/Myb domain
PROSITE profilePS500906.4114270IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-144277IPR009057Homeodomain-like
SuperFamilySSF466894.18E-2056125IPR009057Homeodomain-like
PROSITE profilePS5129422.20371125IPR017930Myb domain
SMARTSM007174.7E-1375123IPR001005SANT/Myb domain
PfamPF002492.9E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2478124IPR009057Homeodomain-like
CDDcd001677.93E-1178119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEGMANISDD ASNGENGFLA MFGGDESGGG GSGGVGSGGD QGGGNWNAVQ RNTGLNRCGK  60
SCRLRWANHL RPNLKKGAFS PEEEKLIVDL HAQFGNKWAR MAALLPGRTN NEIKNYWNTG  120
IKRRQRQGLP LYSDEHDQHN RSTTPTPPTT PFPCLTPTGS NPDIATSFEL FNQNQQQHHQ  180
QQQQYQYQQH PLSPTASHHS PLSSPLQHRQ PFTSSSPHNF LDHSPLPLSS SYSPSPLSFT  240
FQRPAPMLST PLRFKRYCAS PSYNNNNNLS DPPLTTQFPH LDGFRFPVSS GFSQFFQPSV  300
LDSDRGVSSS SSSLAFQPKL ELPLSQYYKP SQEQDIKLDI EFNDPSFQSS SSGLMGDLLF  360
EAQAMASGKN SKKRGYLSLN EGNNVFNAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-224212426107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625862.10.0transcription factor MYB101
TrEMBLA0A445JMU40.0A0A445JMU4_GLYSO; Transcription factor MYB97
STRINGGLYMA08G43000.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-49myb domain protein 101
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]