PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM98927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 141aa MW: 15392.8 Da PI: 9.7963 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 58.7 | 2.4e-18 | 22 | 84 | 8 | 78 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 ++++hTkv+gR RRv l+ +caar+F+L++eLG ++ + +p+i+++t+t+ s++s + + KHM98927.1 22 KKDRHTKVNGRERRVLLPPLCAARIFQLTRELGCKTHGA---------EPSIIAATSTGVSPSSMVvsasT---P 84 79**********************************996.........**********9988855543221...1 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.7E-13 | 21 | 69 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 9 | 22 | 76 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MASKTPIPLK AINTKLPSLK AKKDRHTKVN GRERRVLLPP LCAARIFQLT RELGCKTHGA 60 EPSIIAATST GVSPSSMVVS ASTPTPSLSE DQNIVDMHAN SMVAPTNIEI ESKQAFLSLD 120 FDLWANFNVE YMLQSLMTRL G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM98927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028186347.1 | 2e-68 | transcription factor TCP20-like | ||||
TrEMBL | A0A0B2NUL0 | 1e-100 | A0A0B2NUL0_GLYSO; Transcription factor TCP6 | ||||
STRING | GLYMA11G20201.1 | 8e-68 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 2e-21 | TCP family protein |
Publications ? help Back to Top | |||
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