PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G41030.1 | ||||||||
Common Name | MEE6.10, TCP6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 27618 Da PI: 6.5206 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.9 | 5.5e-32 | 63 | 240 | 3 | 124 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.............seceaesssssasnsss 87 kk++++++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlq a+p+i +t ++ ++ + c ++++ s ++ + + AT5G41030.1 63 EKKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATVNGIKPTesvvsqppltadlMICHSVEEASRTQMEAN 160 69*************************************************************55555333333334444444444444444443333 PP TCP 88 g..........................................kaaksaa.kskksqksaasalnlakesrakararare 124 g ++ ++ ++q +++++ l+++s++++++ a+e AT5G41030.1 161 GlwrnetgqtiggfdlnygigfdfngvpeigfgdnqtpglelrLSQVGVLnPQVFQQMGKEQFRVLHHHSHEDQQQSAEE 240 35666666677788888888888888888888888888888884444444477777778888888888888888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 24.74 | 68 | 122 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.8E-24 | 68 | 130 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY 60 EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG HKSDGETLEW LLQHAEPSIL 120 SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI 180 GFDFNGVPEI GFGDNQTPGL ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE 240 NGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 46 | KRKQTEVKGFDIVVGEKRKKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G41030 | |||||
AtGenExpress | AT5G41030 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G41030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G41030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB010072 | 0.0 | AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198919.1 | 0.0 | TCP family transcription factor | ||||
Swissprot | Q9FLM6 | 0.0 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | A0A178U8B2 | 1e-177 | A0A178U8B2_ARATH; Uncharacterized protein | ||||
STRING | AT5G41030.1 | 1e-180 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 | Representative plant | OGRP922 | 14 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT5G41030.1 |
Entrez Gene | 834105 |
iHOP | AT5G41030 |
wikigenes | AT5G41030 |
Publications ? help Back to Top | |||
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