PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98882.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 212aa    MW: 23175.7 Da    PI: 8.8905
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98882.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-39181181100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  rardPvyG+vg++++lqqq+++l+ael +++
  KHM98882.1  18 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALSRARDPVYGCVGHLFALQQQVMNLQAELTYVQ 116
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  KHM98882.1 117 AH 118
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.22517119IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-3818116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDCGGNKNTG GSERGDGPCG ACKFLRRKCV KGCIFAPYFD SDQGTAHFAA VHKVFGASNA  60
SKLLMRIPAH KRLDAVVTLC YEALSRARDP VYGCVGHLFA LQQQVMNLQA ELTYVQAHLA  120
TMQRLPVKVA PLPPHPQSSS PPPTLHSSDH MAPNADLQSA PMMHFGPLQP HSASLPLGSI  180
VFDQSNRQLD DRELRVLARE FVSKYLPGVR FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-351711910111LOB family transfactor Ramosa2.1
5ly0_B3e-351711910111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354100.0AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521945.21e-157LOB domain-containing protein 19
RefseqXP_028224167.11e-157LOB domain-containing protein 19-like
SwissprotO813223e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0B2NUG81e-155A0A0B2NUG8_GLYSO; LOB domain-containing protein 31
TrEMBLK7KCD71e-155K7KCD7_SOYBN; Uncharacterized protein
STRINGGLYMA03G02631.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-65LOB domain-containing protein 31
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]