PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM98866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 22554.7 Da PI: 4.435 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 77.1 | 3.1e-24 | 10 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C C+ +rr+ ++C + +yf + + +f+ + +lFG +n+++l+++++++er+++++s+++eA+++ rdP++Ga+g++++l +q+++ ++el++++ KHM98866.1 10 SCPICRNQRRRHDDNCEFGQYFLGR-STDFESACRLFGFANLVRLMRSVEPSERQATADSILMEANIWDRDPINGAYGHVFNLVSQIQSFESELETIN 106 699******************9765.589****************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.56 | 9 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-24 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSQGNRNYFS CPICRNQRRR HDDNCEFGQY FLGRSTDFES ACRLFGFANL VRLMRSVEPS 60 ERQATADSIL MEANIWDRDP INGAYGHVFN LVSQIQSFES ELETINNWLA HIRDQQRQPS 120 SFSPNIPNQS IQDEGSNTPI PSLIGADIST RSSEKGESSI VAPKEDANIV VRERDSKVDD 180 NEEGTIPDKE QVDYFRDD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM98866.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006585733.1 | 1e-146 | LOB domain-containing protein 5 | ||||
Refseq | XP_028246683.1 | 1e-146 | LOB domain-containing protein 5-like | ||||
TrEMBL | A0A0R0IRH1 | 1e-144 | A0A0R0IRH1_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JJ36 | 1e-144 | A0A445JJ36_GLYSO; LOB domain-containing protein 28 | ||||
STRING | GLYMA08G25501.1 | 1e-144 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50510.1 | 2e-19 | LOB domain-containing protein 28 |
Publications ? help Back to Top | |||
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