PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.N026300.1

Common Name

B456_N026300, LOC105785083

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 240aa MW: 26688.1 Da PI: 5.2354

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N026300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71	1.1e-22	27	70	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+s rqvtfskRrng++KKA+EL++LC+ ++ +i+fs++gk Gorai.N026300.1 27 KLENESSRQVTFSKRRNGLFKKASELCILCGCNIGIIVFSPKGK 70 679****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.5E-34	18	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.002	18	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.14E-39	19	95	No hit	No description
SuperFamily	SSF55455	8.5E-29	19	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-21	20	40	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-25	28	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-21	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-21	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVSLNQTRSS NTTTKATRGR QKIQIKKLEN ESSRQVTFSK RRNGLFKKAS ELCILCGCNI 60 GIIVFSPKGK PFCFGHPDID MILERYLSKN PNHADGLMMS GDDIAPCLEE FNEESRETLE 120 KLEEEKKRSK EIQKEKEERK MKGLFWWDDP IDNNMGIEEL EAYAKALEEL RNNVANRAST 180 LMGDVFAMST AVTVANPDGL GNGFAVQNSG FAVGDTGGYG DFNLGVEGFN FGHGHDLDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3kov_B	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3kov_I	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3kov_J	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3p57_A	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3p57_B	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3p57_C	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3p57_D	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3p57_I	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
3p57_J	3e-18	19	93	1	75	Myocyte-specific enhancer factor 2A
5f28_A	3e-18	19	93	2	76	MEF2C
5f28_B	3e-18	19	93	2	76	MEF2C
5f28_C	3e-18	19	93	2	76	MEF2C
5f28_D	3e-18	19	93	2	76	MEF2C
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466473.1	1e-179	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A0D2SMJ8	1e-178	A0A0D2SMJ8_GOSRA; Uncharacterized protein
STRING	Gorai.N026300.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15814	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-24	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Gorai.N026300.1
Entrez Gene	105785083

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]