PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.N015500.1 | ||||||||
Common Name | B456_N015500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 83aa MW: 9270.5 Da PI: 4.5069 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 29.9 | 7e-10 | 13 | 66 | 3 | 55 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmq.RlaayfteALaarlar 55 +lLl+cAea+++gdl++a+a+L ++ la ++ d+ q R+++yf+ AL +r ++ Gorai.N015500.1 13 RLLLSCAEAIEDGDLKRADAFLHNILILADERPDSYQsRVVKYFADALVRRAYG 66 79**************************9999987655*************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.046 | 1 | 82 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-7 | 13 | 66 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MDSYLFDTET ALRLLLSCAE AIEDGDLKRA DAFLHNILIL ADERPDSYQS RVVKYFADAL 60 VRRAYGLHPA SSYFTFLVDP AP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX583793 | 3e-43 | JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016714046.1 | 5e-39 | PREDICTED: uncharacterized protein LOC107927488 isoform X1 | ||||
Refseq | XP_016714047.1 | 5e-39 | PREDICTED: uncharacterized protein LOC107927488 isoform X2 | ||||
TrEMBL | A0A0D2SLY9 | 6e-52 | A0A0D2SLY9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.N015500.1 | 9e-53 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8809 | 4 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 5e-10 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.N015500.1 |
Publications ? help Back to Top | |||
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