PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G254100.3

Common Name

B456_013G254100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 348aa MW: 38992.1 Da PI: 6.6418

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G254100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.7e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ ql +Lee++++++ ps e++++LA ++gLte+q++ WF+ rR k+k+ Gorai.013G254100.3 21 KKRTFKTPAQLLALEEAYKEQKFPSDEMKARLAVQIGLTEKQISSWFCHRRLKDKR 76 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-20	4	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.244	17	77	IPR001356	Homeobox domain
SMART	SM00389	5.3E-18	19	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	20	77	IPR009057	Homeodomain-like
CDD	cd00086	2.74E-17	21	77	No hit	No description
Pfam	PF00046	3.6E-16	21	76	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEDSGEQQTE ENKGSLDVVN KKRTFKTPAQ LLALEEAYKE QKFPSDEMKA RLAVQIGLTE 60 KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE 120 VESRRIYGQE FPAADLKYEC RSHQNPYDDR MEDTSSESNL SLNDQPENGA ITQINPRSTK 180 SIGYKPSGYL KVKGEIENSA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN 240 EPMYVGDTRQ THSPDTSGVI KQPSNIVEKL GGEWKTKKEY PVTVKTNLKN KLRVSKQVNA 300 QHPQQDFAAY APHARLPLLT NQTKGSSMDV PSSFSEDETA ETDSSSD*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEDSGEQQTE ENKGSLDVVN KKRTFKTPAQ LLALEEAYKE QKFPSDEMKA RLAVQIGLTE  60
KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE  120
VESRRIYGQE FPAADLKYEC RSHQNPYDDR MEDTSSESNL SLNDQPENGA ITQINPRSTK  180
SIGYKPSGYL KVKGEIENSA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN  240
EPMYVGDTRQ THSPDTSGVI KQPSNIVEKL GGEWKTKKEY PVTVKTNLKN KLRVSKQVNA  300
QHPQQDFAAY APHARLPLLT NQTKGSSMDV PSSFSEDETA ETDSSSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RRLKDKRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464198.1	0.0	PREDICTED: uncharacterized protein LOC105783340
Refseq	XP_012464199.1	0.0	PREDICTED: uncharacterized protein LOC105783340
TrEMBL	A0A0D2VK82	0.0	A0A0D2VK82_GOSRA; Uncharacterized protein
STRING	Gorai.013G254100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	8e-77	HB-other family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G254100.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]