PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G251200.3 | ||||||||
Common Name | B456_013G251200, LOC105783148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 316aa MW: 33764.1 Da PI: 7.4981 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.4 | 2.1e-32 | 173 | 229 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekk+ ksrkpylheSRh+hAlrR+RgsgGrF Gorai.013G251200.3 173 QEPVYVNAKQYQGILRRRQARAKAELEKKV-VKSRKPYLHESRHQHALRRARGSGGRF 229 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-35 | 171 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.949 | 172 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 174 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-24 | 175 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 177 | 197 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.1E-24 | 206 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MQSNSEEGSQ LEPDVHGVHP TAVYSEPKWC NTGYGAISSG ARGVNSLNSS SMECTNASES 60 NDGQSLSNGA LNEEDDVNKE TQTTASSRAV GTGGQEHHNL QHVGSSMPAV RDEGLTQPPL 120 LELVGHSIAC ASNPYIDPLY GGMMAAYGHQ PMGYPPFVGM PHARMTLPIE MAQEPVYVNA 180 KQYQGILRRR QARAKAELEK KVVKSRKPYL HESRHQHALR RARGSGGRFA KKTDTNPGEE 240 KGSGSGPTLS SQSPSSSGSE PLQTDSNETW TSSLTQHAIH HVNGGSHYQK LGGNISNQAA 300 FYPVNGGQSF QKLKG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-19 | 173 | 229 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 4e-36 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463850.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Swissprot | Q9LXV5 | 7e-86 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A0D2U590 | 0.0 | A0A0D2U590_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G251200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 4e-82 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G251200.3 |
Entrez Gene | 105783148 |
Publications ? help Back to Top | |||
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