PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G155500.4
Common NameB456_013G155500, LOC105782607
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 406aa    MW: 44649.1 Da    PI: 6.7343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G155500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.2e-3259116260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gorai.013G155500.4  59 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 116
                         8****************************************.***************85 PP
2WRKY107.28.4e-34222280159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k++er+++dpk+v++tYeg+Hnh+
  Gorai.013G155500.4 222 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHIERASHDPKAVITTYEGKHNHD 280
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2752117IPR003657WRKY domain
PROSITE profilePS5081123.52553117IPR003657WRKY domain
SuperFamilySSF1182902.35E-2555117IPR003657WRKY domain
SMARTSM007744.1E-3458116IPR003657WRKY domain
PfamPF031061.0E-2459115IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37207282IPR003657WRKY domain
SuperFamilySSF1182902.88E-29214282IPR003657WRKY domain
PROSITE profilePS5081138.939217282IPR003657WRKY domain
SMARTSM007741.3E-38222281IPR003657WRKY domain
PfamPF031065.2E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAGSSNELSL SVPFHTATSV ASAPVEVDVD ELNQSGNSNS GMQSGQTDHR VSGSSTISDD  60
GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITEIIYKG THDHPKPQPS  120
RRYSSGNTMS VQEERFDKVP PLTGRDDKSS NMYGQMAHSI EPNNTADSSP VTANDDNVDD  180
VDDDDPFSKR RKMDGGIDII PVVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP  240
NPRSYYKCTS AGCPVRKHIE RASHDPKAVI TTYEGKHNHD VPTAKTSSHD IAGPVTVNAL  300
SRIRSEENDA ISLDLGVGIS PAPENSSNEH QQLHSELLQS HHQTGGSSFK LHQVTPMTAY  360
YGVPNGGMNQ YGSREAPSEG RTVDITPLNH SYAYSQTMGR ILTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3744282377Probable WRKY transcription factor 4
2lex_A2e-3744282377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697620.0KF669762.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462907.10.0PREDICTED: probable WRKY transcription factor 20
RefseqXP_016705426.10.0PREDICTED: probable WRKY transcription factor 20
RefseqXP_016705427.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-164WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2SES70.0A0A0D2SES7_GOSRA; Uncharacterized protein
TrEMBLA0A0D2U1W10.0A0A0D2U1W1_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VE950.0A0A0D2VE95_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KSI10.0A0A1U8KSI1_GOSHI; probable WRKY transcription factor 20
STRINGGorai.013G155500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-156WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]