PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G121300.1

Common Name

B456_013G121300, LOC105783718

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 671aa MW: 74188.6 Da PI: 7.3023

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G121300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.3	9.7e-16	384	421	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk Gorai.013G121300.1 384 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 421 79**********************************96 PP
2	TCR	52.4	1.1e-16	470	509	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Gorai.013G121300.1 470 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 509 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.2E-17	382	423	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.442	383	510	IPR005172	CRC domain
Pfam	PF03638	4.6E-11	385	420	IPR005172	CRC domain
SMART	SM01114	1.2E-17	470	511	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.0E-12	472	508	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MDTPDKTQIT PTSNLCKFED SPVFKYIDSL SPIELAKSRQ TDNGFSSLAF LSPSSLFPSP 60 QITCHRESRF SVKRHHFLEP LNSRVARSGH ESNTSEGASK VDEHLGCLNN DSSYKETSSD 120 QVDEQPNLAT DLPRTLKYDC RSPDGDFEPC DEILKKTNVE VAGQERSPFQ CNRDKWEERQ 180 QSFQNERNLR KICGIKRSEE SAGSDWDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD 240 PSGSCKQSKS GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQQFSIRRRC 300 LVFEKSPGFG LHLNSLPNIP KGQSPLSKST LSSMNRGEVP DDNKGVVTEN SYEMPATFGG 360 NEADHNSPEK KRQKFELVEE SVACKRCNCK RSKCLKLYCD CFAAGLYCIE PCSCQDCFNK 420 PIHENVVLET RRQIESRNPL AFAPKVIRTT NGVSDSMVQG EINKTPASAR HKRGCNCKRS 480 SCLKKYCECF QAGVGCSLSC RCEGCKNSFG RKDGGCESES DGDNLEACEK NASEKSSHDT 540 VISKGQEHPN LSVPSPDISR LPFAYTGKLA AFFPHSIKSS PQLCSTQEQG SSDTSSCKPK 600 LESNLDGIPE NGTPEIPKHK CFTLVSNPTS PNCKRVFSTP NHDSTSSSTK WRSRKLILRS 660 VPSFPSFSPP *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MDTPDKTQIT PTSNLCKFED SPVFKYIDSL SPIELAKSRQ TDNGFSSLAF LSPSSLFPSP  60
QITCHRESRF SVKRHHFLEP LNSRVARSGH ESNTSEGASK VDEHLGCLNN DSSYKETSSD  120
QVDEQPNLAT DLPRTLKYDC RSPDGDFEPC DEILKKTNVE VAGQERSPFQ CNRDKWEERQ  180
QSFQNERNLR KICGIKRSEE SAGSDWDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD  240
PSGSCKQSKS GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQQFSIRRRC  300
LVFEKSPGFG LHLNSLPNIP KGQSPLSKST LSSMNRGEVP DDNKGVVTEN SYEMPATFGG  360
NEADHNSPEK KRQKFELVEE SVACKRCNCK RSKCLKLYCD CFAAGLYCIE PCSCQDCFNK  420
PIHENVVLET RRQIESRNPL AFAPKVIRTT NGVSDSMVQG EINKTPASAR HKRGCNCKRS  480
SCLKKYCECF QAGVGCSLSC RCEGCKNSFG RKDGGCESES DGDNLEACEK NASEKSSHDT  540
VISKGQEHPN LSVPSPDISR LPFAYTGKLA AFFPHSIKSS PQLCSTQEQG SSDTSSCKPK  600
LESNLDGIPE NGTPEIPKHK CFTLVSNPTS PNCKRVFSTP NHDSTSSSTK WRSRKLILRS  660
VPSFPSFSPP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-19	385	507	12	120	Protein lin-54 homolog
5fd3_B	1e-19	385	507	12	120	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	2e-33	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	2e-33	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464782.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X5
TrEMBL	A0A0D2VE36	0.0	A0A0D2VE36_GOSRA; Uncharacterized protein
STRING	Gorai.013G121300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17096	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	7e-86	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.013G121300.1
Entrez Gene	105783718

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]