PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G118000.1

Common Name

B456_013G118000, LOC105784245

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 328aa MW: 36980.5 Da PI: 5.4494

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G118000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.3	1.2e-56	17	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdee++++yL +kv ++++++ +i e+d++k+ePwdLp k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke Gorai.013G118000.1 17 LPPGFRFHPTDEEIITHYLLEKVMNSNFSA-AAIGEADLNKSEPWDLPDKAKMGEKEWYFFCQRDRKYPTGMRTNRATQAGYWKATGKDKE 106 79***********************999.78***********99999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ kg lvg+kktLvfykgrap+gekt+Wvmheyrle Gorai.013G118000.1 107 IFKGKGCLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 144 9*******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-65	12	169	IPR003441	NAC domain
PROSITE profile	PS51005	60.413	17	168	IPR003441	NAC domain
Pfam	PF02365	4.1E-30	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEDAIVVNQR HQELMELPPG FRFHPTDEEI ITHYLLEKVM NSNFSAAAIG EADLNKSEPW 60 DLPDKAKMGE KEWYFFCQRD RKYPTGMRTN RATQAGYWKA TGKDKEIFKG KGCLVGMKKT 120 LVFYKGRAPR GEKTNWVMHE YRLEGKFSYY NLPKAAKDEW VVCRVFHKNT AGINKSPIAM 180 ASLGDEFMDY ASLPPLMDPT FDCESEFKAI NKTPVSSSIF NPQIPTQDPV FFHPETSDSG 240 TGSLRTEDEA SIRALAGNYS GDHIGQRQCN KVEQFSSNQS MVSPSQDTGH STEINNNEIS 300 SVISKSFGLG SIDPYDDIED LACLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	15	172	15	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	15	172	15	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	15	172	15	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	15	172	15	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	15	172	18	172	NAC domain-containing protein 19
3swm_B	2e-54	15	172	18	172	NAC domain-containing protein 19
3swm_C	2e-54	15	172	18	172	NAC domain-containing protein 19
3swm_D	2e-54	15	172	18	172	NAC domain-containing protein 19
3swp_A	2e-54	15	172	18	172	NAC domain-containing protein 19
3swp_B	2e-54	15	172	18	172	NAC domain-containing protein 19
3swp_C	2e-54	15	172	18	172	NAC domain-containing protein 19
3swp_D	2e-54	15	172	18	172	NAC domain-containing protein 19
4dul_A	2e-54	15	172	15	169	NAC domain-containing protein 19
4dul_B	2e-54	15	172	15	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU706340	0.0	EU706340.1 Gossypium hirsutum NAC domain protein NAC6 (NAC6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465518.1	0.0	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FK44	1e-119	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0D2TZN7	0.0	A0A0D2TZN7_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5QPY6	0.0	A0A2P5QPY6_GOSBA; Uncharacterized protein
STRING	Gorai.013G118000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-121	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Gorai.013G118000.1
Entrez Gene	105784245

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]