PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G063500.2

Common Name

B456_013G063500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 167aa MW: 19004.4 Da PI: 9.2361

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G063500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.6	2.8e-37	10	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wy++s+r++ nr t++gyWka g +++ Gorai.013G063500.2 10 VPPGFRFHPTDEELVVHFLQRKAALLPCHP-DVIPDLHLYPYDPWELDGKALGEGKQWYYYSRRSE--------NRNTRNGYWKAMGMEES 91 69***********************999.99**********977778899**9865........788999********* PP NAM 92 vlsk.kgelvglkktLvfykgrapkge....ktdWvmheyrl 128 v+++ +++ vg+kk Lvf+ g+a++g ktdW+mheyrl Gorai.013G063500.2 92 VVNRsSSRRVGIKKYLVFFIGEAEEGGgggvKTDWIMHEYRL 133 99867788*******998888644444*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-44	8	140	IPR003441	NAC domain
PROSITE profile	PS51005	41.508	10	162	IPR003441	NAC domain
Pfam	PF02365	3.1E-24	11	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MGDNNSINKV PPGFRFHPTD EELVVHFLQR KAALLPCHPD VIPDLHLYPY DPWELDGKAL 60 GEGKQWYYYS RRSENRNTRN GYWKAMGMEE SVVNRSSSRR VGIKKYLVFF IGEAEEGGGG 120 GVKTDWIMHE YRLSDSDSSS GTSRSSKRRG HNSKIVSILL YTILHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-35	10	144	17	153	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-35	10	144	17	153	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-35	10	144	17	153	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-35	10	144	17	153	NO APICAL MERISTEM PROTEIN
3swm_A	7e-35	10	144	20	156	NAC domain-containing protein 19
3swm_B	7e-35	10	144	20	156	NAC domain-containing protein 19
3swm_C	7e-35	10	144	20	156	NAC domain-containing protein 19
3swm_D	7e-35	10	144	20	156	NAC domain-containing protein 19
3swp_A	7e-35	10	144	20	156	NAC domain-containing protein 19
3swp_B	7e-35	10	144	20	156	NAC domain-containing protein 19
3swp_C	7e-35	10	144	20	156	NAC domain-containing protein 19
3swp_D	7e-35	10	144	20	156	NAC domain-containing protein 19
4dul_A	6e-35	10	144	17	153	NAC domain-containing protein 19
4dul_B	6e-35	10	144	17	153	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461186.1	1e-113	PREDICTED: NAC domain-containing protein 68-like
Swissprot	Q8GWK6	7e-57	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0D2S9E4	1e-120	A0A0D2S9E4_GOSRA; Uncharacterized protein
STRING	Gorai.013G063500.1	1e-112	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-51	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Gorai.013G063500.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]