PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G042700.1

Common Name

B456_013G042700, LOC105782649

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 277aa MW: 31914.5 Da PI: 5.9846

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G042700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.7e-17	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v+ +l lp++f++++ ++ ++++tl de+g+++ k+ +k++ l++GW++F +++L +gD +vF+l+ +ef Gorai.013G042700.1 129 FVKPMLQSHVTGGFWLGLPNQFCKKNL--PHHDVMVTLVDEEGEEFVTKYLADKTG----LSGGWRGFSIDHNLVDGDALVFQLVAPTEF- 212 89*******************9994..34679************666666....*********************9986777. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r Gorai.013G042700.1 213 -KVYIIR 218 .888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-21	121	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-25	122	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.54E-27	127	218	No hit	No description
Pfam	PF02362	1.1E-15	129	219	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-22	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.238	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAESELSYEE TRKRRLEENK KRMEELNLKS LSQALKSKSV KSSPAKPRTP RKQVELTAVR 60 RSSRVADKPK PDYKDVPLEP FERLRRGYNR GHSHRDLFNR VYASAEERAY AIERAEHLES 120 TLDSEYPSFV KPMLQSHVTG GFWLGLPNQF CKKNLPHHDV MVTLVDEEGE EFVTKYLADK 180 TGLSGGWRGF SIDHNLVDGD ALVFQLVAPT EFKVYIIRAY ESDDNGGGED EKGGEDEREE 240 ENREDEKEEK REDDGKEADV EPDVQNRRSK RIRARK*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX623188	1e-91	JX623188.1 Gossypium hirsutum clone NBRI_GE70273 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462975.1	0.0	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	8e-92	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A0D2TUN6	0.0	A0A0D2TUN6_GOSRA; Uncharacterized protein
STRING	Gorai.013G042700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G042700.1
Entrez Gene	105782649

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]