PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.013G033400.2 | ||||||||
Common Name | B456_013G033400, LOC105782683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 203aa MW: 22525.1 Da PI: 6.38 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27 | 9e-09 | 5 | 42 | 6 | 37 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++++e++ fC ++ lC+ C + H+ H Gorai.013G033400.2 5 CDVCDKEEATVFCSADEAALCQGCDVGVHHAnklatkH 42 ***************************97444666666 PP | |||||||
2 | zf-B_box | 29 | 2.3e-09 | 56 | 96 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++e ++ lfC++++ ++C++C l++H+ H+ Gorai.013G033400.2 56 PLCDICQERRAFLFCQEDRAMFCRECDLSIHRAnentqkHN 96 78*****************************7666666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.964 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.30E-7 | 5 | 47 | No hit | No description |
Pfam | PF00643 | 3.2E-7 | 5 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.869 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.61E-10 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 1.0E-7 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MKIWCDVCDK EEATVFCSAD EAALCQGCDV GVHHANKLAT KHSRFSLLHP SINEFPLCDI 60 CQERRAFLFC QEDRAMFCRE CDLSIHRANE NTQKHNRFLL TGVKLSPSLS LNPASSSSET 120 KSSSSHSSKR SRFTLPNNQN FTSPPPMDKP LASTSTTYRL QDNASISTSN NISEYLMEKL 180 PGWNVDDFPD PSSGGDANGF YF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463040.1 | 1e-150 | PREDICTED: B-box zinc finger protein 21-like isoform X2 | ||||
Swissprot | Q9LQZ7 | 8e-65 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0D2W2G4 | 1e-149 | A0A0D2W2G4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G033400.1 | 1e-146 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-63 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.013G033400.2 |
Entrez Gene | 105782683 |