PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G008300.1
Common NameB456_013G008300, LOC105782571
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 306aa    MW: 35072 Da    PI: 7.248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G008300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.6e-23133194259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 
                         +Dg+ WrKYGqK++ +s++prsY+rCt++   gC++ k+v+r +ed+ ++  +tY g H+++
  Gorai.013G008300.1 133 QDGHGWRKYGQKDILNSKHPRSYFRCTHKydqGCRAIKQVQRLEEDGsQMYRTTYIGAHTCK 194
                         7***************************99999**********999736899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23119195IPR003657WRKY domain
PROSITE profilePS5081117.259127191IPR003657WRKY domain
SuperFamilySSF1182904.32E-22129194IPR003657WRKY domain
SMARTSM007747.6E-34132195IPR003657WRKY domain
PfamPF031067.8E-24133194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0031347Biological Processregulation of defense response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGTLSAWSEN LSTKKKKKVI KQLVEGQDYA NQLQILLHNN NYNPSQQQKT EHHLSSTKDQ  60
LVDKILSSFN QTLTELTSVN VSSSHNQTAS NDDQLVKSED CSESRRPRPK GKRGCYKRKR  120
AEQARTVVSD TTQDGHGWRK YGQKDILNSK HPRSYFRCTH KYDQGCRAIK QVQRLEEDGS  180
QMYRTTYIGA HTCKNHSFKA PWIMSDSEFR GTCMAPIERH DDRRSNLAPT TPVVKQETNE  240
EMSGTPDDVT DLDSAMWKDF MEFEYCSEPD VMISNVYSCT GIKFRNFEMD FVNGFEFDGS  300
DECVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23126194269OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697800.0KF669780.1 Gossypium hirsutum WRKY transcription factor 106 (WRKY106) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462843.10.0PREDICTED: probable WRKY transcription factor 54
TrEMBLA0A0D2S6670.0A0A0D2S667_GOSRA; Uncharacterized protein
STRINGGorai.013G008300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-43WRKY DNA-binding protein 54
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]