PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G000800.1

Common Name

B456_013G000800, LOC105782304

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 689aa MW: 75084.4 Da PI: 8.6747

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G000800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.3	6e-12	184	246	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e kr r+ +NRe+A+ sRqRKk ++eeLe+kv ++ + ++L +++ e a+l++++ Gorai.013G000800.1 184 EEEEKRKARLLRNRESAQLSRQRKKHYVEELEDKVRTMHSTITDLNNKIAFFMAENATLRQQL 246 6899******************************************99999999999988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	5.3E-11	184	246	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.9E-17	184	248	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.3	186	249	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-12	188	246	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-17	188	247	No hit	No description
CDD	cd14704	2.04E-20	189	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MAESPLEPQM GSELESLAIP PMDPLYLSSD LGFPLDENDD FQLTFDDFDE LYFPSDSDHL 60 IMPDSSGAPA FTSESYVERY LNSSSPGLDS FSGPNSSGNS HSPISSLGSG NCGSAVSDDT 120 NVTSPDSGNN MDQKIDVEEL GKRRVSKRKK GNEETDSIKC RRSSSLLTDN YKSNSDNKLN 180 SLSEEEEKRK ARLLRNRESA QLSRQRKKHY VEELEDKVRT MHSTITDLNN KIAFFMAENA 240 TLRQQLSTGG AGGGSAGMCP PQPVPLPMYP PVAYPWMPCG PPYMMKPPGS QVPLIPIPRL 300 KTQQQSRPAS KAKKNESKTK KVASVSVLGM LFFILLFSGL VPIMNVRYDN TPVGSGPGFV 360 GDGFYEVHRG RVLRVDSHLN RSKYSRDAAF SYGDFNISNR VHGRRSESGG ERKETGAQSA 420 PDYIKNVSEP LTASLYVPRN DKLVKIDGNL IIHSVLASEK ALASHKASER KNKETGLAIP 480 KNFSPALAIP NARENGGKHS REYRNPAERP MALSSGSADA LKDHIRSTAA DGKMQQWFRE 540 GVAGPMLSSG MCTEVFQFDA SAPGAIVPAS SVTTESAKNR QNATQLNKGR NRRILHGHPV 600 PLSRSDLNIT QEHVGRNSGK QNLQGNKTAS SMVVSVLIDP REAGDGDMDD MIVPKSLSRI 660 FVVVLLDSVK YVTYSCGLPR SGLHLVTA*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MAESPLEPQM GSELESLAIP PMDPLYLSSD LGFPLDENDD FQLTFDDFDE LYFPSDSDHL  60
IMPDSSGAPA FTSESYVERY LNSSSPGLDS FSGPNSSGNS HSPISSLGSG NCGSAVSDDT  120
NVTSPDSGNN MDQKIDVEEL GKRRVSKRKK GNEETDSIKC RRSSSLLTDN YKSNSDNKLN  180
SLSEEEEKRK ARLLRNRESA QLSRQRKKHY VEELEDKVRT MHSTITDLNN KIAFFMAENA  240
TLRQQLSTGG AGGGSAGMCP PQPVPLPMYP PVAYPWMPCG PPYMMKPPGS QVPLIPIPRL  300
KTQQQSRPAS KAKKNESKTK KVASVSVLGM LFFILLFSGL VPIMNVRYDN TPVGSGPGFV  360
GDGFYEVHRG RVLRVDSHLN RSKYSRDAAF SYGDFNISNR VHGRRSESGG ERKETGAQSA  420
PDYIKNVSEP LTASLYVPRN DKLVKIDGNL IIHSVLASEK ALASHKASER KNKETGLAIP  480
KNFSPALAIP NARENGGKHS REYRNPAERP MALSSGSADA LKDHIRSTAA DGKMQQWFRE  540
GVAGPMLSSG MCTEVFQFDA SAPGAIVPAS SVTTESAKNR QNATQLNKGR NRRILHGHPV  600
PLSRSDLNIT QEHVGRNSGK QNLQGNKTAS SMVVSVLIDP REAGDGDMDD MIVPKSLSRI  660
FVVVLLDSVK YVTYSCGLPR SGLHLVTA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRVSKRK
2	579	592	RQNATQLNKGRNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3227	0.0	flower\|seedling\| flowering

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269\|PubMed:17662035, ECO:0000269\|PubMed:20876872}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462424.1	0.0	PREDICTED: bZIP transcription factor 17
Swissprot	O22208	1e-180	BZP17_ARATH; bZIP transcription factor 17
TrEMBL	A0A0D2V8N8	0.0	A0A0D2V8N8_GOSRA; Uncharacterized protein
STRING	Gorai.013G000800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8881	27	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-155	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G000800.1
Entrez Gene	105782304

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792] Sagor GH, et al. The polyamine spermine induces the unfolded protein response via the MAPK cascade in Arabidopsis. Front Plant Sci, 2015. 6: p. 687 [PMID:26442007] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kim JS,Yamaguchi-Shinozaki K,Shinozaki K ER-Anchored Transcription Factors bZIP17 and bZIP28 Regulate Root Elongation. Plant Physiol., 2018. 176(3): p. 2221-2230 [PMID:29367234] Cifuentes-Esquivel N, et al. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem., 2018. 119(8): p. 6857-6868 [PMID:29693271] Guan P, et al. SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance. Plant Physiol., 2018. 178(3): p. 1390-1405 [PMID:30287478]