PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G180300.1 | ||||||||
Common Name | B456_012G180300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 288aa MW: 33512.4 Da PI: 9.7401 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.4e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Gorai.012G180300.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 90.3 | 3.6e-30 | 91 | 175 | 15 | 99 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s++qe+ kLk++++ Lqr+qR+llGedL++Ls keL++Le+qL++slk iRs++++++l+q+++lq+ke+ l+e+nk+L+++l Gorai.012G180300.1 91 LSSRQEYLKLKARYDALQRSQRNLLGEDLGPLSSKELESLEKQLDSSLKLIRSTRTQYMLDQLNDLQRKEHLLNEANKTLKQRLV 175 5789*****************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.22E-43 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.3E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.883 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.1E-25 | 93 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMIKTLERY QKCNYGAPEP NVSSREAALE LSSRQEYLKL KARYDALQRS QRNLLGEDLG 120 PLSSKELESL EKQLDSSLKL IRSTRTQYML DQLNDLQRKE HLLNEANKTL KQRLVEGYQV 180 NSLQLNPNAT EDVGYGRQQV HHQPHGDAFF HPLDCEPTLQ IGYVNFDSVS KNRMLDRIEF 240 VRFIGFYIIN IHFLNGLNLF TFPYFKSIFW FESIIRFMNK SKSVNFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 9e-50 | 75 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 9e-50 | 75 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 9e-50 | 75 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 9e-50 | 75 | 177 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1416 | 0.0 | flower| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00605 | ChIP-seq | Transfer from AT1G24260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF538965 | 0.0 | AF538965.1 Gossypium hirsutum MADS box protein GHMADS-1 (MADS-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460219.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL9 homolog | ||||
Refseq | XP_016694865.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL9 homolog | ||||
Refseq | XP_016721096.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL9 homolog | ||||
Refseq | XP_017612638.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL9 homolog | ||||
Swissprot | Q8LLR0 | 1e-140 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | A0A0D2W0J7 | 0.0 | A0A0D2W0J7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G180300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6220 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-126 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G180300.1 |
Publications ? help Back to Top | |||
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