PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G147900.1

Common Name

B456_012G147900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 19769.7 Da PI: 10.3733

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G147900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.3	5.6e-20	17	62	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k ienk r vtfskRr gi KK +ELS+LC++e++ i+fs+tgk Gorai.012G147900.1 17 KMIENKEDRLVTFSKRRLGIYKKISELSILCGTEILFIVFSPTGKP 62 68******************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.4E-24	9	80	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.927	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.1E-27	9	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-17	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-22	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-17	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-17	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MASTGKKTRG RKKTQMKMIE NKEDRLVTFS KRRLGIYKKI SELSILCGTE ILFIVFSPTG 60 KPFSFGCPSV ESVSNHFLSK NRPINDNTNI LIEAYRMVRT NKLVQHYNEV HSQMDEIKRK 120 KRELVSAQQT SETNNTNHWW KTPIHQCNPR ELDELYSRFS ELAHLFHIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hbx_A	2e-14	2	66	3	67	SERUM RESPONSE FACTOR
1hbx_B	2e-14	2	66	3	67	SERUM RESPONSE FACTOR
1hbx_D	2e-14	2	66	3	67	SERUM RESPONSE FACTOR
1hbx_E	2e-14	2	66	3	67	SERUM RESPONSE FACTOR
1k6o_B	2e-14	2	66	2	66	Serum response factor
1k6o_C	2e-14	2	66	2	66	Serum response factor
1srs_A	2e-14	2	66	3	67	PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B	2e-14	2	66	3	67	PROTEIN (SERUM RESPONSE FACTOR (SRF))
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673103.1	4e-68	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2S3E0	1e-124	A0A0D2S3E0_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.012G147900.1	1e-124	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28460.1	5e-29	AGAMOUS-like 59

Link Out ? help Back to Top
Phytozome	Gorai.012G147900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]