PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G28460.1 | ||||||||
Common Name | AGL59 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20636.7 Da PI: 10.043 | ||||||||
Description | AGAMOUS-like 59 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.4 | 7.6e-18 | 15 | 64 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ie + r+vtfskR+ngi K +ELS+LC++eva i +s +gk y++ AT1G28460.1 15 KKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFG 64 6899********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.474 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-19 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-23 | 7 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.92E-32 | 8 | 78 | No hit | No description |
PRINTS | PR00404 | 5.2E-15 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-20 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-15 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-15 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020093 | anatomy | antipodal cell | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNPKKTKGKQ KINIKKIEKD EGRSVTFSKR LNGIYTKISE LSILCGVEVA FIGYSCSGKP 60 YTFGSPSFQA VAERFLNGDA SSSSSSSLVM NAHKQAKIQE LCKKYNRLVE ELKVDEVKVK 120 KAAALAETRV VNKDVWWKVD PNDVKDHEKA KKMMEKYQEL YDKLCEQAAS RIKRGHDENN 180 NK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 261497_x_at | 0.0 | ||||
Expression Atlas | AT1G28460 | - | ||||
AtGenExpress | AT1G28460 | - | ||||
ATTED-II | AT1G28460 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G28460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G28460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010155 | 0.0 | AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174168.1 | 1e-133 | AGAMOUS-like 59 | ||||
TrEMBL | Q9SGP4 | 1e-131 | Q9SGP4_ARATH; AGAMOUS-like 59 | ||||
STRING | AT1G28460.1 | 1e-132 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT1G28460.1 |
Entrez Gene | 839745 |
iHOP | AT1G28460 |
wikigenes | AT1G28460 |