PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G127900.1

Common Name

B456_012G127900, LOC105781065

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 236aa MW: 27283.2 Da PI: 7.6877

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G127900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	27	75	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++E++RR+++++ ++ L +llP++ ++++ ls + +Av+YI +L Gorai.012G127900.1 27 ERKIIEKNRRNHMKNLYASLNSLLPHR--NSKEPLSLPDQIDEAVNYITKL 75 5789********************6..26666************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.58E-4	22	77	No hit	No description
PROSITE profile	PS50888	11.446	23	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-11	23	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-10	25	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-7	27	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MELQMEYLAV DKQTEKKRAR CSSAKVERKI IEKNRRNHMK NLYASLNSLL PHRNSKEPLS 60 LPDQIDEAVN YITKLKTRMN ESREKKESLM SRKRSYTYAD TITSETTASL KSPEIKMNEN 120 GSAMEVVLTT GKDSQFMFYE MIYIIHQHGA QVLNASFSIL GNTVFHIVHA EIGAFVGAQI 180 IKDKLKRLVK GSSCEEELQQ ELWNYQIHPE TWDLNYEIYS ETWDFPIMLG STYMP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461092.1	1e-177	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A0D2V5U7	1e-176	A0A0D2V5U7_GOSRA; Uncharacterized protein
STRING	Gorai.012G127900.1	1e-177	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G127900.1
Entrez Gene	105781065

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]