PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G126600.1 | ||||||||
Common Name | B456_012G126600, LOC105780790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 440aa MW: 48402.4 Da PI: 6.8796 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 160 | 213 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 ++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ Gorai.012G126600.1 160 KKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 213 689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.315 | 156 | 215 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 157 | 216 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-18 | 158 | 216 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-26 | 160 | 213 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-8 | 162 | 211 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MLAVSPLRNT RNDENKGKME SFSIISSEEF PDFAEGNLLE SIDFDDLFIG IDEGDMLPDL 60 EMDPEILADL PTSRCDVEES MNTSVEKTDE DSSQRKEEEE EEDKISGSGS GSSSSKGEEI 120 FSKREEPNAV DKTPSKYAVK GRKSSAAQAK NNNQGKRKTK KVDWTPELHR RFVQAVEQLG 180 VDKAVPSRIL ELMGIDCLTR HNIASHLQKY RSHRKHLLAR EAEAANWTQR RQMYGGAATP 240 AGGGKRDISP WLAPTMGFPP MSPMHHHHFR PLHVWGHPTL DQSLVHLWTK HPAHTTSQPP 300 QPPQSTWGPP PANPSFWHHH HQRVSNGLTP GTPCFPQPIA PTVNNHSSFG SILPVCISTR 360 FRAAPVPGIP PHHHGTGGQS GPHPLIDFHP SKESIDAAIG DVLTKPWLPL PLGLKPPSTD 420 SVLGELQRQG VPKIPPSCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 157 | 211 | 3 | 57 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT428870 | 4e-43 | KT428870.1 UNVERIFIED: Ilex paraguariensis isolate E3 transcription activator GLK1-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460747.1 | 0.0 | PREDICTED: transcription activator GLK1-like isoform X1 | ||||
Swissprot | Q9SIV3 | 4e-98 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A0D2VYR7 | 0.0 | A0A0D2VYR7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G126600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-74 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G126600.1 |
Entrez Gene | 105780790 |