PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G125500.1
Common NameB456_012G125500, LOC105780301
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 255aa    MW: 28879.8 Da    PI: 9.3939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G125500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.9e-51141381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++ +r+nrat sgyWkatg dk+
  Gorai.012G125500.1  14 LPPGFRFHPTDEELVVQYLRRKVLACPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNTNRSNRATISGYWKATGIDKQ 100
                         79****************************.89***************54...46799********************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++++vg+kktLvfy+g+ap+g +tdW+mheyr+
  Gorai.012G125500.1 101 IVTSrSNQAVGMKKTLVFYRGKAPNGCRTDWIMHEYRV 138
                         999857778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-589174IPR003441NAC domain
PROSITE profilePS5100556.34414174IPR003441NAC domain
PfamPF023659.6E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEKLSFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLACP LPASIIPEVD VCKADPWDLP  60
GDLEQERYFF STREAKYPNT NRSNRATISG YWKATGIDKQ IVTSRSNQAV GMKKTLVFYR  120
GKAPNGCRTD WIMHEYRVVS TETAACNAPP NKKNQTQNNV VPMENWVLCR IFLKKRGAKN  180
DEEGLQSCNQ RIGKLRTSKP VFYDFLTKDR TDLNLAPSSS SSVSSGITQV SNNDADDHEE  240
SSCCNSFPYF RRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511217915170NO APICAL MERISTEM PROTEIN
1ut4_B2e-511217915170NO APICAL MERISTEM PROTEIN
1ut7_A2e-511217915170NO APICAL MERISTEM PROTEIN
1ut7_B2e-511217915170NO APICAL MERISTEM PROTEIN
3swm_A4e-511217918173NAC domain-containing protein 19
3swm_B4e-511217918173NAC domain-containing protein 19
3swm_C4e-511217918173NAC domain-containing protein 19
3swm_D4e-511217918173NAC domain-containing protein 19
3swp_A4e-511217918173NAC domain-containing protein 19
3swp_B4e-511217918173NAC domain-containing protein 19
3swp_C4e-511217918173NAC domain-containing protein 19
3swp_D4e-511217918173NAC domain-containing protein 19
4dul_A2e-511217915170NAC domain-containing protein 19
4dul_B2e-511217915170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472290.0KC847229.1 Gossypium hirsutum NAC domain protein NAC52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313796.10.0NAC domain-containing protein 83
RefseqXP_012459997.10.0PREDICTED: NAC transcription factor 25
SwissprotQ9FY934e-99NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D2V5R50.0A0A0D2V5R5_GOSRA; Uncharacterized protein
TrEMBLW6JBA60.0W6JBA6_GOSHI; NAC domain protein NAC52
STRINGGorai.012G125500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]