PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G119600.5
Common NameB456_012G119600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 331aa    MW: 36217.3 Da    PI: 5.62
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G119600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33198256160
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         ++DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Gorai.012G119600.5 198 VEDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 256
                         58****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-28190257IPR003657WRKY domain
SuperFamilySSF1182901.1E-25193257IPR003657WRKY domain
SMARTSM007742.0E-36198256IPR003657WRKY domain
PROSITE profilePS5081123.479199257IPR003657WRKY domain
PfamPF031067.7E-26199255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
QPQTPYPPPM AASSSSAFIN MDNNVNQSTS TNTTWPSFSD HNKFSTQVPN FKSFAPSPTL  60
ISPSSAFSPT DFLDSPVLFS TSALFSSPTT TGAFGGAQTV NWKNDSNDHQ QGIKPKGFDF  120
SFQVPQTQLT LPSTTATTAF QSCSNTVSME QPAWSLEKTG GEMVQFKPNM QSNTGSQPAG  180
NYTSQYHQTS QYMNNRKVED GYNWRKYGQK QVKGSENPRS YYKCTYPNCP TKKKVERSLD  240
GQITEIVYKG SHNHPKPQST RGNRSSSSHS AEISDQSVGT LGNQLGDSFI MQDETSGSID  300
DDDFDQASSA ISNTNGCDDI NENEPDAKRW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-171982571474WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4146770.0KC414677.1 Gossypium hirsutum WRKY33 (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460140.10.0PREDICTED: probable WRKY transcription factor 33
TrEMBLA0A0D2S1S50.0A0A0D2S1S5_GOSRA; Uncharacterized protein (Fragment)
TrEMBLA0A0D2V5J00.0A0A0D2V5J0_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.012G119600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.14e-51WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]