PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G054500.1
Common NameB456_012G054500, LOC105780752
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 332aa    MW: 36995.4 Da    PI: 6.77
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G054500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Gorai.012G054500.1 14 KGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding49.59.6e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Gorai.012G054500.1  67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129423.934965IPR017930Myb domain
SuperFamilySSF466891.4E-3011108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001677.06E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.45166116IPR017930Myb domain
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467112IPR001005SANT/Myb domain
CDDcd001676.08E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIRRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLH  120
GSEVYCRDGF TSSAASDQIS RGQWERKLQT DINMAKQALS DALSPEKSSD LTELKPCHGN  180
TYAKPEGYAS STENIAKLLK GWMRKNPLKP ASTNSGVTQQ SYDNMVATGV TTDSANSSEG  240
NDQRCSKPMC EGFESLFVFG SFDSSNSDDF SQSISTEASL SLQDETKPDL SPQLSLLEKW  300
LFDDAANQGK YYQLSDITLD ENPSFFLEGG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-25141164105C-Myb DNA-Binding Domain
1msf_C1e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460698.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-119MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D2RY820.0A0A0D2RY82_GOSRA; Uncharacterized protein
STRINGGorai.012G054500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58422348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-107myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]