PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.012G028600.1 | ||||||||
Common Name | B456_012G028600, LOC105780731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 48512.6 Da PI: 8.6043 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 53 | 79 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.012G028600.1 53 PGEPDCSYYIRTGLCRFGATCRFNHPP 79 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.012G028600.1 100 QPECQYYLKTGTCKFGATCKFHHPR 124 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 146 | 170 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.012G028600.1 146 ETECAYYLRTGQCKFGSTCKFHHPQ 170 578********************97 PP | |||||||
4 | zf-CCCH | 36.3 | 9.3e-12 | 308 | 331 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+++tG Ck+G+ C+F+H++ Gorai.012G028600.1 308 LECQFYMKTGDCKFGAVCRFHHPR 331 58********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 3.9e-13 | 351 | 377 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Gorai.012G028600.1 351 PGEPLCIFYSRYGICKFGPSCKFNHPM 377 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 58 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 103 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 149 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 304 | 332 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 304 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.04E-5 | 308 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 310 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 350 | 378 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 350 | 377 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 352 | 377 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-5 | 353 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 355 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEFSFGAGIP MSRTPAAGPE GTSLSPSLNQ DGTWQINLRS SETMEPGPYP ERPGEPDCSY 60 YIRTGLCRFG ATCRFNHPPN RKLAITTARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF 120 HHPRDKAGIA GRVSLNFLGY PLRPNETECA YYLRTGQCKF GSTCKFHHPQ PTNMMVSLRG 180 SPIYPTFPSP TTSGQQSFLG GLTNWSRASF IPSPRWQGPS SYAPLILPQG MVSVPSWNAY 240 GGQLASVSSS ENLQQTNGNN QIYGTSRPNE SASAGSQALF SQFRSGSAPV GFYALQRENV 300 FPERPGELEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC ILSPIGLPLR PGEPLCIFYS 360 RYGICKFGPS CKFNHPMGVF TFNYSASSPF EAPVHRLLGS SSGSGGINLS SEGLVEAGST 420 KPRRLSLSEN RQLSSSDDSI DTEG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460673.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0D2THG6 | 0.0 | A0A0D2THG6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G028600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-176 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.012G028600.1 |
Entrez Gene | 105780731 |
Publications ? help Back to Top | |||
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