PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G028200.2
Common NameB456_012G028200, LOC105780670
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 732aa    MW: 79555.4 Da    PI: 6.3849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G028200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1047.9e-33246303260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh+k
  Gorai.012G028200.2 246 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHSK 303
                         7****************************************.***************85 PP
2WRKY102.13.3e-32464522159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe
  Gorai.012G028200.2 464 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKYVLTTYDGKHNHE 522
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-29233304IPR003657WRKY domain
PROSITE profilePS5081123.158240304IPR003657WRKY domain
SuperFamilySSF1182905.75E-26241304IPR003657WRKY domain
SMARTSM007741.0E-36245303IPR003657WRKY domain
PfamPF031065.3E-25246301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-35449524IPR003657WRKY domain
SuperFamilySSF1182907.32E-28457524IPR003657WRKY domain
PROSITE profilePS5081137459524IPR003657WRKY domain
SMARTSM007747.1E-37464523IPR003657WRKY domain
PfamPF031062.3E-24465522IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MDNNVILFTD PQESVTADDD DQGEGRGPSI AERRAATCGF KAEMICTPTF KSPLGPTSPR  60
LPYFTISPGI SPTALLDSPI MLPNAQASPT TGTFHNHDDT VVNHIKGDRD RSLVSSLTCK  120
TQNMDSRPSL SSVEDQVSSA FNLVQNAEVD PQPLSHLDRP LDLKIPSSLS KEATSRSFAA  180
DSVADVGILN DIVNDNANLG FHPSELGSGQ TLRQKESLNG QDVCTRLLEG DQKVTNTAMG  240
TTRTSEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCQVKK KVERSLDGQI TEIIYKGAHN  300
HSKPQPCRRP SLGSTLSSEE MSESVEGNGT SVKVGGGLIW RNSQAGSKEI KLGSDWRADG  360
LERTSSSIVT DLSDPLSTAQ GKSVGMFESA ETPEFSSTLA SHDDENDDRA TQGSISLCGD  420
AANDDESESK RRKTESCMTE MNVASSASRE PRVVVQIESD VDILDDGYRW RKYGQKVVKG  480
NPNPRSYYKC TSPGCPVRKH VERASHNLKY VLTTYDGKHN HEVPAARNSS HVNSSGCNLP  540
PTMPNTQAAL SLSRNTHPLK PETPIQDFAP PFDRKPEFKS EYVRPGFLGD FSNEMKLGEA  600
ALASVYQMKF PSIQKAIPYG SFGLNPNCIA SHSSSSIAST IPNFPISLPL NLPTPANLSL  660
AGFDMNNVGK STGPIHSFLP GQQLKENGVR FHGIKQELKD DNLYDPSLPI VDHASVSSSS  720
VYQYAIGKFP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33246525878Probable WRKY transcription factor 4
2lex_A3e-33246525878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311710.0AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460596.10.0PREDICTED: probable WRKY transcription factor 34
RefseqXP_012460597.10.0PREDICTED: probable WRKY transcription factor 34
TrEMBLA0A0D2V1010.0A0A0D2V101_GOSRA; Uncharacterized protein
STRINGGorai.012G028200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-92WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]