PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G021400.3

Common Name

B456_012G021400, LOC105779959

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 859aa MW: 96816.3 Da PI: 6.5838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G021400.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.6	1.1e-14	66	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA+++GFs+ + + ++ + +g i++ +f Cs+e +++++ ++ C+a++++++++ gkw tk++++HnH+++ Gorai.012G021400.3 66 FYDGYARQLGFSTHVGQFTRATPDGPIVTWDFACSREVFKRKNVES--------------CNAMFRIERKDGGKWIATKFVEDHNHSMV 140 9*************************************999877..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-12	66	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-32	271	363	IPR018289	MULE transposase domain
Pfam	PF04434	5.6E-11	548	582	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.239	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MDVGGGKGDN VNGVNAESNK GGDNNWNLIE NLTEIEVVAN QDDDGVAGGK PCVGMEFESE 60 DAGKTFYDGY ARQLGFSTHV GQFTRATPDG PIVTWDFACS REVFKRKNVE SCNAMFRIER 120 KDGGKWIATK FVEDHNHSMV TPSKVHYLRP RRHLAGATKN VSETLEATAD VYVSSDENHA 180 CYEATRIKNA SSVMPNRLGR SMGPSGYFTP SSQRRTLGRD AQNLLNYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RAAYNYFGDA VTFDTMYRPN QYQIPFAPFT GINHHGQMVL 300 FGCALLLDES ESSFTWLFRT WLSAMNDQPP VSIITDQDRA IQAAVSQVFP ETRHCICKWH 360 ILREGQERLA HIYLAHPSFY GELYSCINFS ETTEDFELSW GALLDKYDLH KNEWLQAVYN 420 ARKQWAPVYF RGTFFGTLSS NQGVSSFFNG YVNQQTTIPL FFKQYERALE DSLEKEIEAD 480 FDTICTTPVP KTPSPMEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVCKYRVAK 540 YEHEHKAYFV ALNISDMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRS 600 AKSWVGLDEQ HADPQGIETL TTRFNNLCQE ALKLAEEGAM APETYNAAIN ALKEAGKKIT 660 SVKKNVSKVR PPSSRTSGNN HEDGCKKTTS PVSKMIPSLW PWQDAIPPHF NLNDVGAPLT 720 DLNQPSMVPV SLHRDTGPLD STVVLTCFKS MTWVIENQNA MEAGKVAVIN LKLHDYGKNP 780 LGETEVQFRL TRVTLEPMLQ SMAYISQQLS TPLNRVAVIN LKLQDTKTTS GETEVKFQVS 840 KDTLGSMLRS MAYIREQL*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MDVGGGKGDN VNGVNAESNK GGDNNWNLIE NLTEIEVVAN QDDDGVAGGK PCVGMEFESE  60
DAGKTFYDGY ARQLGFSTHV GQFTRATPDG PIVTWDFACS REVFKRKNVE SCNAMFRIER  120
KDGGKWIATK FVEDHNHSMV TPSKVHYLRP RRHLAGATKN VSETLEATAD VYVSSDENHA  180
CYEATRIKNA SSVMPNRLGR SMGPSGYFTP SSQRRTLGRD AQNLLNYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RAAYNYFGDA VTFDTMYRPN QYQIPFAPFT GINHHGQMVL  300
FGCALLLDES ESSFTWLFRT WLSAMNDQPP VSIITDQDRA IQAAVSQVFP ETRHCICKWH  360
ILREGQERLA HIYLAHPSFY GELYSCINFS ETTEDFELSW GALLDKYDLH KNEWLQAVYN  420
ARKQWAPVYF RGTFFGTLSS NQGVSSFFNG YVNQQTTIPL FFKQYERALE DSLEKEIEAD  480
FDTICTTPVP KTPSPMEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVCKYRVAK  540
YEHEHKAYFV ALNISDMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRS  600
AKSWVGLDEQ HADPQGIETL TTRFNNLCQE ALKLAEEGAM APETYNAAIN ALKEAGKKIT  660
SVKKNVSKVR PPSSRTSGNN HEDGCKKTTS PVSKMIPSLW PWQDAIPPHF NLNDVGAPLT  720
DLNQPSMVPV SLHRDTGPLD STVVLTCFKS MTWVIENQNA MEAGKVAVIN LKLHDYGKNP  780
LGETEVQFRL TRVTLEPMLQ SMAYISQQLS TPLNRVAVIN LKLQDTKTTS GETEVKFQVS  840
KDTLGSMLRS MAYIREQL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459441.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_012459442.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_012459443.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0D2V0S0	0.0	A0A0D2V0S0_GOSRA; Uncharacterized protein
STRING	Gorai.012G021400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Gorai.012G021400.3
Entrez Gene	105779959

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]