PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G014000.1
Common NameB456_012G014000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 374aa    MW: 40743.4 Da    PI: 6.9121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G014000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.89.5e-28183243259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dD y+WrKYGqKe+ gs++pr+YYrCt++   +Cp+kk+v+r ++d  ++e+tY g+H+++
  Gorai.012G014000.1 183 DDNYTWRKYGQKEILGSKYPRAYYRCTHQkmyNCPAKKQVQRLDNDFYTFEVTYIGQHTCT 243
                         8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-26177243IPR003657WRKY domain
SuperFamilySSF1182902.09E-25180244IPR003657WRKY domain
SMARTSM007749.4E-36182244IPR003657WRKY domain
PfamPF031061.6E-24183242IPR003657WRKY domain
PROSITE profilePS5081121.012183245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLKSNPKATP KHTMDQEQQQ HTTLSLILDG CKLAKELEES IGNLGNQLQP EILSKSCDDI  60
INIFATAKQR LNNNAHHHQD PSLFTHHLLH PPQDSSAHHM QTDPSLQEWL KYGAITQAMD  120
MIQSCRPSIS MGGEIQAMDV LNSGKAASSS SSQRSHRSRK DDEEKCKTRV AAPQMGNTDL  180
PPDDNYTWRK YGQKEILGSK YPRAYYRCTH QKMYNCPAKK QVQRLDNDFY TFEVTYIGQH  240
TCTMSSTAPS IPQPPPVLHD QMVMTQAMVS QPALPPTSSS TTSSSIVPSG SWLSMEFSLG  300
SGSGGRGSGG AGSSSGGGSA TGSRYGRDVE YSVVADMADV MFNSGSSSSN SMDFIFPCAE  360
DKWEAPGSGD KKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19183242968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697770.0KF669777.1 Gossypium hirsutum WRKY transcription factor 101 (WRKY101) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458475.10.0PREDICTED: WRKY transcription factor 55 isoform X1
TrEMBLA0A0D2V0H10.0A0A0D2V0H1_GOSRA; Uncharacterized protein
STRINGGorai.012G014000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-54WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]