PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.012G013900.1 | ||||||||
Common Name | B456_012G013900, LOC105780920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 303aa MW: 34260.1 Da PI: 5.5688 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.2 | 1.1e-25 | 129 | 190 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg +WrKYGqK++ +s +prsY+rCt + gC++ k+v+r ++dp++ eitY g+H+++ Gorai.012G013900.1 129 MEDGQAWRKYGQKKILNSIHPRSYFRCTRKyeqGCRAMKQVQRMEDDPQMYEITYIGTHTCT 190 58**************************988889**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-25 | 120 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.174 | 124 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 126 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-35 | 129 | 191 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 130 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MGTLSPWPET LSNSKKRVIQ QLVHGQECAT QLQILFHNPS EEGGRLSAEE VLVQNILTSF 60 NHTLSALSCI DSSEVSQNQT TCNDDSPWCE DRRSEGCSES SKRPGSKDKR GCYKRKRDAE 120 AWTVVSATME DGQAWRKYGQ KKILNSIHPR SYFRCTRKYE QGCRAMKQVQ RMEDDPQMYE 180 ITYIGTHTCT DSFRAPQIIP DSESWESQMG SHSQIPTKHH HLNPAAFPSV KQEAKEAAAS 240 DVTDMDCMVW KEIMGGGGGF EYSSEHGMGC DYGDCRAFQY EFLKPAEIEH DYHFDESECL 300 IV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-26 | 123 | 189 | 2 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00408 | DAP | Transfer from AT3G56400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF031075 | 0.0 | KF031075.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460911.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0D2TGM3 | 0.0 | A0A0D2TGM3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5REM6 | 0.0 | A0A2P5REM6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G013900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4061 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-50 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.012G013900.1 |
Entrez Gene | 105780920 |
Publications ? help Back to Top | |||
---|---|---|---|
|