PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G009000.4
Common NameB456_012G009000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1037aa    MW: 115216 Da    PI: 6.7441
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G009000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.97.9e-2371172199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       ++k+++  +l  +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +gD+v+F  
  Gorai.012G009000.4  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsMQKPAQ--ELEARDLHENVWKFRHIYRGKPQRHLLTTGWSLFVSGKRLFAGDSVLFI- 158
                         99*****************************95444444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Gorai.012G009000.4 159 -RDETQQLLLGIRRA 172
                         .5578889***9997 PP
2Auxin_resp117.11.5e-38197280183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+W +L+
  Gorai.012G009000.4 197 AAHAAANNSPFTVFYNPRASLSEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWHNLQ 280
                         79********************************9879*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-4162200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-4062186IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-1870162No hitNo description
SMARTSM010199.8E-2371173IPR003340B3 DNA binding domain
PfamPF023625.7E-2171172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.88571173IPR003340B3 DNA binding domain
PfamPF065075.0E-34197280IPR010525Auxin response factor
PfamPF023091.2E-69221009IPR033389AUX/IAA domain
PROSITE profilePS5174527.029241008IPR000270PB1 domain
SuperFamilySSF542776.96E-79371002No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MKRDVDAQIL NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLS  60
LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQKPAQE LEARDLHENV  120
WKFRHIYRGK PQRHLLTTGW SLFVSGKRLF AGDSVLFIRD ETQQLLLGIR RANRQPANLS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASLSEF VIPLAKYYKA VYNHQISPGM  240
RFRMMFETEE SGTRRYMGTI TGISDIDPVR WKNSQWHNLQ VGWDESTAGE RRNRVSIWEI  300
EPVTAPFFIC PSPLFRSKRP RQPGMPADEY SDLDNLFKRP MPWLGDDICL KDSDAHPGLS  360
LVQWMNMQQN PLLANSMQPN FMQSLAGSTM QNFDGADLSH QMGLSAPQMP QPNNLQFNAH  420
RLPQKVQQLD QVPKLPSTMN SLGSIIQPQQ LNDMTQQSRQ NLVAQPLPSS QVLQPQALVQ  480
SNNILQQQQT SNPTHQLPLS LPQNLQQHLV GPNHLQNLMH SQLPDPLNQH LQVPDNQVQF  540
QLMQKLQQQQ QLLLAQQSAL QQPGQLAQPQ DQQRQLLDAS QSFSSSVTAS QVLEMPQNIP  600
TLLPQSNVAP QQMPKNNSQA NVWFSQPPLQ SKVQQQQTGM LPEVPGLVGP FQTTATNQFS  660
TAVSSVMMSA AVAAPSVITD DNPSCSTSPS TNCPSVLQPM IDSRVHRSTG LGDDISQSTA  720
TVLNPNAVET MSTKANMVKE QQQKSVKPLL NISKSQNQGS FAPQNCINGA TAHADCLDTS  780
SSTTSVCLSQ SDVHLHQNTP SYNPQTMLLR DTSQDGEVQA YPRNSVSYGN NMDSQIEMSM  840
NSDTLSAKGM MGLGKDFSNH LSSGGVLASY ENPKDTQQEL SSSMVSQSYR VPDMAFNSID  900
PTINHSSFIN RSGWTPPSQF QRLRTYTKVY KRGAVGRSID ITRYSGYDEL KQDLARRFGI  960
EGQLEDRGRV GWKLVYVDHE NDVLLVGDDP WEEFINCVRC IKILSPQEVQ QMSVDGEFGN  1020
SVLPNQACSS SGNGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-138230189388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539840.0DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458721.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458722.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458723.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458724.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_012458726.10.0PREDICTED: auxin response factor 19-like isoform X3
TrEMBLA0A0D2RVM90.0A0A0D2RVM9_GOSRA; Auxin response factor
STRINGGorai.012G009000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]